NNAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAGGCTTATCCGATGACTCAACATTTAATACCATATAGTA
CTCTGGCAGAGGACCTGGGTTCAGTTCCCAGCACCCATATGGTGGCTCAC
ATCCATCTGTAACTCCAGCTCCAGAGGACTTGGCCACCCTCTTCTGACCT
CCCAGGACATCGTGCATACATGCAGTACACATACATACATGGAGGCAAAA
CAGTCATATACATAAGCTTTTTAAAAGGACGCAATGCTCACCAATGATCT
TCAGACAGCCGTCAGGGTCAAACTCTCCAATATCTCCAGTGCACAGCCAC
CGCTGTCCATTTTCATCTTCAAAGAAATCTGTCTTTGTTTTTGCTTCATT
TTTGTAGTACCCCATTGTCACATTTTGGCCACCAATAAGAATTTCACCTC
TGGGATGTGGTTTGTCAGTATTAAAATAGCCACCTAATTAATAAACACAA
AATAACACATATAGGTATTATACAAATATTCTAAACTATTAGTTTCTAAG
TATAGACATCTTATTTTAACCAATTAAGAGACTCCAAGAGAAACAAACTA
GACTGTGTGGGCTAACATTATCAATAAGCTAGAGACAAATTCTCAGGTGT
TAAATAATGGAAATCCCTGCTTTTAAGCTACTATTCCCGCCTAAAACCCA
GCATCCTCCCCCCACTATGTGAAATAATTATAAGGGTTTTACTCCGCCTA
AACTTCCAACTAATAAAAGAACGGTCGCAAT

NCCCATGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAGTATATTCAAATGTGGAA
AACAGCCATGCATCAAATAAATGATAAATTGCCCTCTGCANAGGTATGCT
TGAATGGCTGGACCTANAANAATGTCTTCCACTATGTCTCACAGTANNCA
TAGTGACATAAACTAATCANGGTGTTTGCTAACTTGTCTATGGACCNNNN
NNNNNNNNCAGTGATCTGTCGTCTGAAACCTTCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCGTATTTTTTAAAAAAAGGNNAG
NNNNNGGGGGGNNGGNTTTNGGGTATGGTGGAGCACCGTGGGTGGGGTGG
GGGGAGGAGAAGTGTGTATGTGTGTTGCTGTGTGGGATGGATGTGTGTGC
AGGCAGGCGTGTCGCTGTGAGGAGGCGTGCGGGCGGTGCAGTGGTGTAGT
TGTGAGGGCGCAGGAGGCGGAGGGGGCGTGGGGGGAGGGGGGCGGGCGGA
CGTGAGGGGGTGAGGGGCGGGGGCGTAGCGCAGAGAGGAGGGGGCGCGGA
GGGGTGGGACGGGCGACGGGNNNCTNNNNNNNNNNNNNNNNNNNNNNNNN
NTGTGGGNGGGCTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCNNCCCNCCGTCTTGTTTGGTTAGTG

Query= MSMg01no414_b19.b1 MSMg01no414_b19.b1 CHROMAT_FILE:
MSMg01no414_b19.b1 PHD_FILE: MSMg01no414_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:01 2005
         (537 letters)



>mm_chr1_78697325_78698261
          Length = 937

 Score =  932 bits (482), Expect = 0.0
 Identities = 508/518 (98%), Gaps = 3/518 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  gatgactcaacatttaataccatatagtactctggcagaggacctgggttcagttcccag 82
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 934 gatgactcaacatttaagaccatgtagtactctggcagaggacctgggttcagttcccag 875

                                                                       
Query: 83  cacccata---tggtggctcacatccatctgtaactccagctccagaggacttggccacc 139
           ||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 874 cacccatatggtggtggctcacaaccatctgtaactccagctccagaggacttggccacc 815

                                                                       
Query: 140 ctcttctgacctcccaggacatcgtgcatacatgcagtacacatacatacatggaggcaa 199
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ctcttctgacctccgaggacatcgtgcatacatgcagtacacatacatacatggaggcaa 755

                                                                       
Query: 200 aacagtcatatacataagctttttaaaaggacgcaatgctcaccaatgatcttcagacag 259
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 754 aacagtcatacacataagctttttaaaaggacgcaatactcaccaatgatcttcagacag 695

                                                                       
Query: 260 ccgtcagggtcaaactctccaatatctccagtgcacagccaccgctgtccattttcatct 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ccgtcagggtcaaactctccaatatctccagtgcacagccaccgctgtccattttcatct 635

                                                                       
Query: 320 tcaaagaaatctgtctttgtttttgcttcatttttgtagtaccccattgtcacattttgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcaaagaaatctgtctttgtttttgcttcatttttgtagtaccccattgtcacattttgg 575

                                                                       
Query: 380 ccaccaataagaatttcacctctgggatgtggtttgtcagtattaaaatagccacctaat 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ccaccaataagaatttcacctctgggatgtggtttgtcagtattaaaatagccacctaat 515

                                                                       
Query: 440 taataaacacaaaataacacatataggtattatacaaatattctaaactattagtttcta 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 taataaacacaaaataacacatataggtattatacaaatattctaaactattagtttcta 455

                                                 
Query: 500 agtatagacatcttattttaaccaattaagagactcca 537
           ||| ||||||||||||||||||||||||||||||||||
Sbjct: 454 agtgtagacatcttattttaaccaattaagagactcca 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)