BAC Information

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BAC

Clone NameMSMg01-414B20
Chromosome1 (Build37)
Map Location 123,901,235 - 123,901,747
singlet/doubletsinglet
Overlap genenone
Upstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
Downstream geneLOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414B20.T7 (MSMg01no414_b20.b1)MSMg01-414B20.TJ (MSMg01no414_b20.g1)
ACCAG510487AG510488
length775767
length of high quality
(start - end)		519 (72 - 590)250 (79 - 328)
definitionCHROMAT_FILE: MSMg01no414_b20.b1 PHD_FILE: MSMg01no414_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:01 2005CHROMAT_FILE: MSMg01no414_b20.g1 PHD_FILE: MSMg01no414_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGCAGGATCTCCACCAGAAATTATGGGAGAAAGAGACTTGCT
GGCTCGTGCTTAAGTACCTTCCTTATTCAGTGAGGGGCCCTTCTATATGA
CCTCCTTAATGATCAAGGAAATCTTCCACAGACATGCTTACAGCATACAC
CAGCACAATAAGGTCAATTAATCAATCAACAGACTCTTTTCAGATGATTC
TAGACTGTGTCAAGTTGACAATTTTGAGATCTTGTTTCTCTTTATACCAC
TACAAGAAAAGTAGCCTAAACTTTCTGACCATCTGCTATGCATCCTGCCA
TCCCCAGTTCAGGGATTTGTTCATTAAGTTTTTACTATAACCTTAGAAAA
TGCATAGATTAGTATTATTATTTGCTAGGAGAAATGTTCAAGGCTTAGGG
AAATTCTTAAACTTACACAGGTAGCTTTCAATTTATAAGTAATAAGTTCA
CATTTGAAAGCAAATGTTACATGAATATGTCTAGGACCCAAGCACCAATG
CACTACTTGGGGTTTATTTTATTTATTTTCATCTTCTATCAGACTTCAAA
CCAGGATGTGTCATCTTGTCTATTACTAGCTTGAGCTTGGAGCAGCTGGA
GATGTACTCAGCCTATCCACTCTTTTCTAGAATGCAATAAACTCTGGGTT
TGATCCCCCGCACTGCATAAAACAAATGGGGCCATGAACACCTGGGGATC
CAACACCTTGGTATGGAAAAGAAAG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGG
CTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAGTCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGAGTGCAGGCTTGTACAACCACTCCGGAAATCAGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTATCTTTTTTATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACAC
ATTCACAAAGAAACTCACACCATATGTCCTCACTGATAAGTGGATATTAG
CCTCAAACCTAGGAAACCCCAGATATTAGATATAATTTGTTAAACACTGA
AAACTCTAGAAAATTGAGACTGTAGGGAGGACCTATGCCCCTCCCTTAAA
TTTGGGAAAAAAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_b20.b1 MSMg01no414_b20.b1 CHROMAT_FILE:
MSMg01no414_b20.b1 PHD_FILE: MSMg01no414_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:01 2005
         (519 letters)



>mm_chr1_123901029_123901947
          Length = 919

 Score =  853 bits (441), Expect = 0.0
 Identities = 496/517 (95%), Gaps = 6/517 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   aaattatgggagaaagagacttgctggctcgtgcttaagtaccttccttattcagtgagg 64
           ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 207 aaattatgggagaaagaaacttgctgactcatgcttaagtaccttccttattcagtgagg 266

                                                                       
Query: 65  ggcccttctatatgacctccttaatgatcaaggaaatcttccacagacatgcttacagca 124
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 267 ggcccttctacatgacctccttaatgaccaaggaaatcttccacagacatgcttacagca 326

                                                                       
Query: 125 tacaccagcacaataaggtcaattaatcaatcaacaga--ctcttttcagatgattctag 182
           ||||||| ||||||||||||||||    ||||||||||  |||||||| |||||||||||
Sbjct: 327 tacaccaacacaataaggtcaatt----aatcaacagactctcttttccgatgattctag 382

                                                                       
Query: 183 actgtgtcaagttgacaattttgagatcttgtttctctttataccactacaagaaaagta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 actgtgtcaagttgacaattttgagatcttgtttctctttataccactacaagaaaagta 442

                                                                       
Query: 243 gcctaaactttctgaccatctgctatgcatcctgccatccccagttcagggatttgttca 302
           |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 443 gcctaaactttctgactatctgctatgcatcctgccatccactgttcagggatttgttca 502

                                                                       
Query: 303 ttaagtttttactataaccttagaaaatgcatagattagtattattatttgctaggagaa 362
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttacgtttttactataaccttagaaaatgcatagattagtattattatttgctaggagaa 562

                                                                       
Query: 363 atgttcaaggcttagggaaattcttaaacttacacaggtagctttcaatttataagtaat 422
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgttcaaggcttagagaaattcttaaacttacacaggtagctttcaatttataagtaat 622

                                                                       
Query: 423 aagttcacatttgaaagcaaatgttacatgaatatgtctaggacccaagcaccaatgcac 482
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagttcacatttgaaagcaaatgctacatgaatatgtctaggacccaagcaccaatgcac 682

                                                
Query: 483 tacttggggtttattttatttattttcatcttctatc 519
           |||||||  ||||||||||||||||||||||||||||
Sbjct: 683 tacttggtatttattttatttattttcatcttctatc 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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