BAC Information

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BAC

Clone NameMSMg01-414E02
Chromosome1 (Build37)
Map Location 120,256,167 - 120,256,387
singlet/doubletsinglet
Overlap genenone
Upstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip
Downstream geneClasp1, Tcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414E02.T7 (MSMg01no414_e02.b1)MSMg01-414E02.TJ (MSMg01no414_e02.g1)
ACCAG510595AG510596
length766774
length of high quality
(start - end)
221 (335 - 555)435 (75 - 509)
definitionCHROMAT_FILE: MSMg01no414_e02.b1 PHD_FILE: MSMg01no414_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:14 2005CHROMAT_FILE: MSMg01no414_e02.g1 PHD_FILE: MSMg01no414_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCAAGTCCTTTTGCTTATGCTAAAAGCACTATACTGGAGCCGTCTC
CCCAGGCACCAGTGATGGCTACCCATAATTCGAGTCCCTTTACCTGTCAG
CCTCCCAAGTCATGCTCTCATATTTACTTCTCAGCTCACCTAACAGCTTT
GGAAGTGACATGAGGCCTGTGTGTCCCACTGAGCCAGCTAGATTAGGATG
CTGGGGACAGTCTCCTGTGATTCTGCTGTGGGCAGGTAAGGCTACAGAAG
CTGAGGAAGCAGGTGAGGATCAGAGTTTTATTGATGAGATCCTGGGACAC
CATGGGCACGGCTGGGACCTGAGGAAAGATGACAGAAGAGATGGAGAGGA
GCAGGTGCCCTCTTCAAGACAGGCATTTGTGATGCTCCCATGCCAGGGGA
GTCGTGGACTGCAGCAGTTTCTCTGGGAGAAGTGGCCCCCAGATTGAGAC
TATGCCCAGATGACTAGGAAGCCTGTGCCCAGTACAAAGGGAGGAAGCAG
CTCAAAGTGACCTCCATCTAAATCAGGTCGGCTCCATGGTTCTCTGACAA
CACTCTGGCCTGCATTTGGCAGTGAGAAGCCTTCTGAGAGAGGAAACACA
CATTTTGACTTCCCAGTATACAGTTATAATTATAAAGCAACCCCCCCCTA
AGTTTATGTATGAAAGATCCAGGGNTGAGCTCTTGACGCGGTTTATGGCC
CAAAAATCAACCTTGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACATTAGACACCTAAGATTCTTTGAC
AAGGTTTAGAACACAAGATCATATGAAGAACCATGCAAGTCAGGAGCAGT
GGAACTGCATGGTAGGTGGTAGAACCCTAAGTAAAATAAATCATGATACC
TAAAGGTAATATCTGAACATCCTTAGACATTGAAATATACAATGTTTGAT
ATAGCTGCATGATAAGATAGGTAATTTTATTTCTGCTTTAGTTGTGAAAG
ATTAAAAATCTTAGTAAGCTACAAAATCATTGTTATTAAAATTATGTTAC
TTCACTACCAATTTTTATTAATATGGTGCTAAGATTATAGTAAAATATAA
TTTTTTTTTAAAAATTTACTGGTCTTCCCACGGGTCTACCCTCCTCTTCA
GCTTCTCCCAGCTTTTCTCAAATTGGACCACGGGAGTCCCTGGCTTCACT
CCATTGATTGCGTGCTAGTATCTGCAACTGACTCTTTGATCTGCGTGTTG
GGACTCTCAGAGCGTAACCATGCTTGGATTCTGTGTTGCAGTACACGACA
CGATCTGTAATAGTGTCAGGCCCTAAGGCCTCCCCCTTGACTTGACGCCC
AGTTGCCCTTGCCTTATGGAGGTCCTTTCACCCGAGGCTCTTCTTCATTT
TTTATCTCCGGGCGCTCCCTTTAAAGGGAAATACTTCCTGGGTTAAATAT
ATTTACCGGGTTCTCGGCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_e02.b1 MSMg01no414_e02.b1 CHROMAT_FILE:
MSMg01no414_e02.b1 PHD_FILE: MSMg01no414_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:14 2005
         (221 letters)



>mm_chr1_120255967_120256587
          Length = 621

 Score =  420 bits (217), Expect = e-122
 Identities = 220/221 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagatcctgggacaccatgggcacggctgggacctgaggaaagatgacagaagagatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgagatcctgggacaccatgggcacggctgggacctgaggaaagatgacagaagagatgg 362

                                                                       
Query: 61  agaggagcaggtgccctcttcaagacaggcatttgtgatgctcccatgccaggggagtcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agaggagcaggtgccctcttcaagacaggcatttgtgatgctcccatgccaggggagtcg 302

                                                                       
Query: 121 tggactgcagcagtttctctgggagaagtggcccccagattgagactatgcccagatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggactgcagcagtttctctgggagaagtggcccccagattgagactatgcccagatgac 242

                                                    
Query: 181 taggaagcctgtgcccagtacaaagggaggaagcagctcaa 221
           ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 241 taggaagcctgtgcccagtacaaagggaggaggcagctcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)