BAC Information

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BAC

Clone NameMSMg01-414F18
Chromosome1 (Build37)
Map Location 185,765,095 - 185,925,941
singlet/doubletdoublet
Overlap gene1700056E22Rik, Dusp10
Upstream geneSusd4, Tlr5, EG666649
Downstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414F18.T7 (MSMg01no414_f18.b1)MSMg01-414F18.TJ (MSMg01no414_f18.g1)
ACCAG510674AG510675
length763774
length of high quality
(start - end)
565 (47 - 611)507 (78 - 584)
definitionCHROMAT_FILE: MSMg01no414_f18.b1 PHD_FILE: MSMg01no414_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:22 2005CHROMAT_FILE: MSMg01no414_f18.g1 PHD_FILE: MSMg01no414_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(185,765,095 - 185,765,652)(185,925,435 - 185,925,941)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTTCTTGTTCCCATCCTATGAGTGAACTCTTGGCATTCTTAAA
TTTTGTCTAAGAATCTCCTGCCAGGAGTTTGGGTAAAACTTAGACAAATC
ATCACCAAGGCATTTCAAGACACCTGTTCAAGTGGGGCTCAAACTCCTCT
TCTCTGAGCATTCTCACTCTGAGACTTGAACATTTTTTATGTGCTTTCTA
CTATAAAAATAAACTGGTGATGAAAATGATAAGAAACACTGAGCTAAAAA
GAATATAGCAACAGCAAATTGCCCAATTTTTCTGCTCAAATTCTGTCAAA
CAAAATTTAAAGAAAATGCTTAGTTGATTCGCTAGCTCTTACTATGCTGT
ATCCACAGGTCTCTGTACTAGCTTTGTGGGGGTACTTTCTTTTTTGTTTC
ACTGTCATCTCCTATTCATCTCTGCTTTAATTCTGAGACAGGAGAACCTA
CTAGAGCATTTGGACAAACTCTTGGGTCTGCTGGCTCTTGCCTCTACCTT
GCCCTCTTGATATTCTCCAACTTGGATAGATTAGAAGTCAGAAATCCAGC
CTTCACTCANGAACATTGCCCAAGAGCAGTGGTTCTCAGCCTGCGGGTTG
TGACACATTTAGGGATCAATCTGACTTTTCCAAGGGGATGCCTAGGACCA
TCCTGCCAAAAGGAATATATACTATGATTCCTAACAGAAGCAAAAAACAG
GTATGAATAACAC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGATTGTAGCTGGTAAAGG
TTTCAACCAGTCATTTATATTCGTGCCCTGTGTGAAGACATCATGACAGC
TCCCTTCACCACTGAGTGGGAAGCAGGTGGCCCAGAGACCTACTTATTTC
AACTGGGTCTCATGGTCTAAAGTTCCCACAACCCTCAAAATAGTGCTACT
TGCTGCGGACCAAGAATTCAACACAGAAGCCCGAGTGGGGCATTTCACAC
TGAAACTGCCTGTCACTTTAGCCCATATGTATGGAGTGTAGGTGACAGAT
GTAGCGAGTTCCCAGTCTTTCATGTTTCTGCACAATGAGGGCAGACTCAG
ACTTTTGCCAGTTTGAGGCCTCCTCTTTCTGTTATAGGAAGTATGTTAAA
ACATCTGTACTTATACCTGGGCTTCAAAAGAAGCCCAAAGATAGAAATCT
TAATACGGGGTAGGCAAAATGGGTGGAAAGAGAGAGAGAAAGGAAGGGTC
CCTAACCACAGCCTCGGTGGAGATCCCCTTCATGTCCTCAAAATTAACTC
TCAACTTTGCATGTGGAGCCCCAGTGTGAGGAGTAACTACTTGTAAGTAC
CTCTTAAATGACCTTTGCAGGTCTGGCACCCTGGAGGTGGCGCCCTGAAA
AAAAAAAAAAAACTCCGGTGCCTGGGAAATCTAGAAATTTTCCCCTAATA
ATTTGGGTGTCATACTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_f18.b1 MSMg01no414_f18.b1 CHROMAT_FILE:
MSMg01no414_f18.b1 PHD_FILE: MSMg01no414_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:22 2005
         (565 letters)



>mm_chr1_185764892_185765855
          Length = 964

 Score = 1023 bits (529), Expect = 0.0
 Identities = 552/561 (98%), Gaps = 5/561 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagttcttgttcc--catcctatgagtgaactcttggcattcttaaattttgtc 61
           |||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttcttg--ccatcatcctatgagtgaactcttggcattcttaaattttgtc 261

                                                                       
Query: 62  taagaatctcctgccaggagtttgggtaaaacttagacaaatcatcaccaaggcatttca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 262 taagaatctcctgccaggagtttgggtaaaacttagacaaatcatcaccaaggcattgca 321

                                                                       
Query: 122 agacacctgttcaagtggggctcaaactcctcttctctgagcattctcactctgagactt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agacacctgttcaagtggggctcaaactcctcttctctgagcattctcactctgagactt 381

                                                                       
Query: 182 gaacattttttatgtgctttctactataaaaataaactggtgatgaaaatgataagaaac 241
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaacattttt-atgtgctttctactataaaaataaactggtgatgaaaatgataagaaac 440

                                                                       
Query: 242 actgagctaaaaagaatatagcaacagcaaattgcccaatttttctgctcaaattctgtc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgagctaaaaagaatatagcaacagcaaattgcccaatttttctgctcaaattctgtc 500

                                                                       
Query: 302 aaacaaaatttaaagaaaatgcttagttgattcgctagctcttactatgctgtatccaca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacaaaatttaaagaaaatgcttagttgattcgctagctcttactatgctgtatccaca 560

                                                                       
Query: 362 ggtctctgtactagctttgtgggggtactttcttttttgtttcactgtcatctcctattc 421
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 561 ggtctctgtactagctttgtgggggtactttctcttttgtttcactgtcatctcctatcc 620

                                                                       
Query: 422 atctctgctttaattctgagacaggagaacctactagagcatttggacaaactcttgggt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctctgctttaattctgagacaggagaacctactagagcatttggacaaactcttgggt 680

                                                                       
Query: 482 ctgctggctcttgcctctaccttgccctcttgatattctccaacttggatagattagaag 541
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ctgctggctcttgcctctaccttgccctcttgatattctccaacatggatagattagaag 740

                                
Query: 542 tcagaaatccagccttcactc 562
           |||||||||||||||||||||
Sbjct: 741 tcagaaatccagccttcactc 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space:   529470
Effective search space used:   529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no414_f18.g1 MSMg01no414_f18.g1 CHROMAT_FILE:
MSMg01no414_f18.g1 PHD_FILE: MSMg01no414_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:23 2005
         (507 letters)



>mm_chr1_185925235_185926141
          Length = 907

 Score =  897 bits (464), Expect = 0.0
 Identities = 497/508 (97%), Gaps = 2/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcagattgtagctggtaaaggtttcaaccagtcatttatattcgtgccctgtgtgaag 60
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 707 tttcaaattgtagctggtaaaggtttcaaccagtcatttatatccgtgccctgtgtgaag 648

                                                                       
Query: 61  acatcatgacagctcccttcaccactgagtgggaagcaggtggcccagagacctacttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 acatcatgacagctcccttcaccactgagtgggaagcaggtggcccagagacctacttat 588

                                                                       
Query: 121 ttcaactgggtctcatggtctaaagttcccacaaccctcaaaatagtgctacttgctgcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 587 ttcaactgggtctcatggtctaaagttcccacaaccctcaaaatagtgctactcgctggg 528

                                                                       
Query: 181 gaccaagaattcaacacagaagcccgagtggggcat-ttcacactgaaactgcctgtcac 239
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 527 gaccaagaattcaacacagaagcccgagtggggcatcttcacactgaaactgcctgtcac 468

                                                                       
Query: 240 tttagcccatatgtatggagtgtaggtgacagatgtagcgagttcccagtctttcatgtt 299
           | ||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tctagccca-aagcagggagtgtaggtgacagatgtagcgagttcccagtctttcatgtt 409

                                                                       
Query: 300 tctgcacaatgagggcagactcagacttttgccagtttgaggcctcctctttctgttata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tctgcacaatgagggcagactcagacttttgccagtttgaggcctcctctttctgttata 349

                                                                       
Query: 360 ggaagtatgttaaaacatctgtacttatacctgggcttcaaaagaagcccaaagatagaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggaagtatgttaaaacatctgtacttatacctgggcttcaaaagaagcccaaagatagaa 289

                                                                       
Query: 420 atcttaatacggggtaggcaaaatgggtggaaagagagagagaaaggaagggtccctaac 479
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 288 atcttaatacggggtaggcaaaaggggtggaaagagagagagaaaggaagggtccctaac 229

                                       
Query: 480 cacagcctcggtggagatccccttcatg 507
           ||||||||||||||||||||||||||||
Sbjct: 228 cacagcctcggtggagatccccttcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)