Query= MSMg01no414_f18.b1 MSMg01no414_f18.b1 CHROMAT_FILE:
MSMg01no414_f18.b1 PHD_FILE: MSMg01no414_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:22 2005
(565 letters)
>mm_chr1_185764892_185765855
Length = 964
Score = 1023 bits (529), Expect = 0.0
Identities = 552/561 (98%), Gaps = 5/561 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagttcttgttcc--catcctatgagtgaactcttggcattcttaaattttgtc 61
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttcttg--ccatcatcctatgagtgaactcttggcattcttaaattttgtc 261
Query: 62 taagaatctcctgccaggagtttgggtaaaacttagacaaatcatcaccaaggcatttca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 262 taagaatctcctgccaggagtttgggtaaaacttagacaaatcatcaccaaggcattgca 321
Query: 122 agacacctgttcaagtggggctcaaactcctcttctctgagcattctcactctgagactt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agacacctgttcaagtggggctcaaactcctcttctctgagcattctcactctgagactt 381
Query: 182 gaacattttttatgtgctttctactataaaaataaactggtgatgaaaatgataagaaac 241
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaacattttt-atgtgctttctactataaaaataaactggtgatgaaaatgataagaaac 440
Query: 242 actgagctaaaaagaatatagcaacagcaaattgcccaatttttctgctcaaattctgtc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgagctaaaaagaatatagcaacagcaaattgcccaatttttctgctcaaattctgtc 500
Query: 302 aaacaaaatttaaagaaaatgcttagttgattcgctagctcttactatgctgtatccaca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacaaaatttaaagaaaatgcttagttgattcgctagctcttactatgctgtatccaca 560
Query: 362 ggtctctgtactagctttgtgggggtactttcttttttgtttcactgtcatctcctattc 421
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 561 ggtctctgtactagctttgtgggggtactttctcttttgtttcactgtcatctcctatcc 620
Query: 422 atctctgctttaattctgagacaggagaacctactagagcatttggacaaactcttgggt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctctgctttaattctgagacaggagaacctactagagcatttggacaaactcttgggt 680
Query: 482 ctgctggctcttgcctctaccttgccctcttgatattctccaacttggatagattagaag 541
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ctgctggctcttgcctctaccttgccctcttgatattctccaacatggatagattagaag 740
Query: 542 tcagaaatccagccttcactc 562
|||||||||||||||||||||
Sbjct: 741 tcagaaatccagccttcactc 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_f18.g1 MSMg01no414_f18.g1 CHROMAT_FILE:
MSMg01no414_f18.g1 PHD_FILE: MSMg01no414_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:23 2005
(507 letters)
>mm_chr1_185925235_185926141
Length = 907
Score = 897 bits (464), Expect = 0.0
Identities = 497/508 (97%), Gaps = 2/508 (0%)
Strand = Plus / Minus
Query: 1 tttcagattgtagctggtaaaggtttcaaccagtcatttatattcgtgccctgtgtgaag 60
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 707 tttcaaattgtagctggtaaaggtttcaaccagtcatttatatccgtgccctgtgtgaag 648
Query: 61 acatcatgacagctcccttcaccactgagtgggaagcaggtggcccagagacctacttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 acatcatgacagctcccttcaccactgagtgggaagcaggtggcccagagacctacttat 588
Query: 121 ttcaactgggtctcatggtctaaagttcccacaaccctcaaaatagtgctacttgctgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 587 ttcaactgggtctcatggtctaaagttcccacaaccctcaaaatagtgctactcgctggg 528
Query: 181 gaccaagaattcaacacagaagcccgagtggggcat-ttcacactgaaactgcctgtcac 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 527 gaccaagaattcaacacagaagcccgagtggggcatcttcacactgaaactgcctgtcac 468
Query: 240 tttagcccatatgtatggagtgtaggtgacagatgtagcgagttcccagtctttcatgtt 299
| ||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tctagccca-aagcagggagtgtaggtgacagatgtagcgagttcccagtctttcatgtt 409
Query: 300 tctgcacaatgagggcagactcagacttttgccagtttgaggcctcctctttctgttata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tctgcacaatgagggcagactcagacttttgccagtttgaggcctcctctttctgttata 349
Query: 360 ggaagtatgttaaaacatctgtacttatacctgggcttcaaaagaagcccaaagatagaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggaagtatgttaaaacatctgtacttatacctgggcttcaaaagaagcccaaagatagaa 289
Query: 420 atcttaatacggggtaggcaaaatgggtggaaagagagagagaaaggaagggtccctaac 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 288 atcttaatacggggtaggcaaaaggggtggaaagagagagagaaaggaagggtccctaac 229
Query: 480 cacagcctcggtggagatccccttcatg 507
||||||||||||||||||||||||||||
Sbjct: 228 cacagcctcggtggagatccccttcatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
