BAC Information

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BAC

Clone NameMSMg01-414H10
Chromosome1 (Build37)
Map Location 90,607,954 - 90,608,200
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c
Downstream geneLOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688, Centg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414H10.T7 (MSMg01no414_h10.b1)MSMg01-414H10.TJ (MSMg01no414_h10.g1)
ACCAG510754AG510755
length779790
length of high quality
(start - end)
554 (46 - 599)248 (74 - 321)
definitionCHROMAT_FILE: MSMg01no414_h10.b1 PHD_FILE: MSMg01no414_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:30 2005CHROMAT_FILE: MSMg01no414_h10.g1 PHD_FILE: MSMg01no414_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATTCCTAAACATGATAAAAGCAATATACACCAAACCAG
TAGCCAACATCAAACTAAATGGGGAGAAACTCTAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGTTGCCCACTTTCTCCTTACCTATTCAATATAGT
ACTTGAAGTCCTAGCCAGAACAATTCGACAACAAAAGGACATCAAGGGGA
TATAAATTGGAAAGGAAGATGTCAAAATATCACTATTTGCAGATGATATG
ATAGTATATATAAGTGACCCCAATTATTCCACCAGAGAACTCCTAAATCT
GATAAACAGCGTCAGTGCACTAGCTGGATATAAAATTAACTCAAACAAAT
CAATGGCCTTTCTCTACACAAAGGATAAATGGACTGAGAAAGAAATTAGG
GAAACAACACCCTTCACAATAGTCACAAATAATATAACATACCTTGGTGT
GACTCTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAA
GGAAGAAATTGAAGGAGATCTCAGAAATTGGAAAGATCTCCCATGCTCAT
GGATTGACATGATTAATATAGTAAAAAAAAAGGCTATCCTGCCGAAAGCA
ATCTACAGATTCCATGCGATCCCCATCAAAATTCCACTCAATTCTTCCTG
AGTTAGAAAGGGCAATTACAATTCTTCTGGAAATATAATAACCCATGAAA
GCATAAAAAATTCTCCTTATAAAAGAACC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAAATTCCCATTGCTGCAAATGTCGAATATCC
ATAAATAAGCAATTGCATTGAGTTGCATGAGACAGGTGAAATTAGCCTCC
AAGTGTGACGGAGACTCAGGCTGAAGGAGAGTTTCCAGGTCAGTTGTGGA
AAGCACCCGTTTTCCCTTCAGAACTGCCCATCTGTTGTCTCAAGGTCAGG
CTGACTTCGCTAAAGGCAATGTTAACAATTCTAGGTCCTTCCCTCGGAGG
TGAAGGGCACGAGGGGCTTATTCCTCNTATATTTTTGACCTCGGCGTGAG
GGGAGGGGGTGGATATTCTAGCCTCCTAGGTTCTTCTCCAGTTTGGCTAA
CCCGAAGATATGAAACCATGGTTGGAAACACACCTGGGAGACTGGAGACG
TTTTGTGCTATTACTTTGAAATTTTAAACTCTCTTTTCTGCTGTGAGTGG
ATGCTTATCATCTTTCGTGATGACATTTAATCTTCATATCACTAACTCCC
TGTGGCTTGAGAGTGTTGGACAAGAGCTCTCGTTAGTTGTACGCTTTCTT
CGAGCTATATTGCTGCCTTTCCAGTATGTTTGTTTCTAATTTCCTTATTT
ACCTGTGCCGATTTTTATTTTCTTCCTTTCCTGTCGATCACCGTTCTGAC
GTTTAACCACACTCTTTATGGGTTCTTTTTTTCTTTCCGACTGCTTCTTT
TCACACCTTTCTTTTGTCCATTTCTCCCCTCTTTTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_h10.g1 MSMg01no414_h10.g1 CHROMAT_FILE:
MSMg01no414_h10.g1 PHD_FILE: MSMg01no414_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:31 2005
         (248 letters)



>mm_chr1_90607754_90608401
          Length = 648

 Score =  431 bits (223), Expect = e-125
 Identities = 241/247 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccattgctgcaaatgtcgaatatccataaataagcaattgcattgagttgcatgagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccattgctgcaaatgtcgaatatccataaataagcaattgcattgagttgcatgagac 260

                                                                       
Query: 61  aggtgaaattagcctccaagtgtgacggagactcaggctgaaggagagtttccaggtcag 120
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 261 aggtgaaattagcctccatgtgtgacagagactcaggctgaaggagagtttccaggtcaa 320

                                                                       
Query: 121 ttgtggaaagcacccgttttcccttcagaactgcccatctgttgtctcaaggtcaggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ttgtggaaagcacccgttttcccttcagaactgcccatctgttgtctcaagatcaggctg 380

                                                                       
Query: 181 acttcgctaaaggcaatgttaacaattctaggtccttccctcggaggtgaagggcacgag 240
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaacgctaaaggcaatgttaacaattctaggtccttccctcggaggtgaagggcacgag 440

                  
Query: 241 gggctta 247
           |||||||
Sbjct: 441 gggctta 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)