BAC Information

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BAC

Clone NameMSMg01-414H16
Chromosome1 (Build37)
Map Location 170,003,855 - 170,165,518
singlet/doubletdoublet
Overlap genePbx1
Upstream geneC030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414H16.T7 (MSMg01no414_h16.b1)MSMg01-414H16.TJ (MSMg01no414_h16.g1)
ACCAG510766AG510767
length781772
length of high quality
(start - end)		540 (48 - 587)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no414_h16.b1 PHD_FILE: MSMg01no414_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:32 2005CHROMAT_FILE: MSMg01no414_h16.g1 PHD_FILE: MSMg01no414_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,165,025 - 170,165,518)(170,003,855 - 170,004,099)
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCGAAAATGTCTTTTGATTTCTTTTCTTTAACCTCCACCCCCA
ACTGTAACCAGTTTTCTGTAAAAGTCATAAAGCTAGATTCCAAGTTCCAA
CCATAGATAGATGCCTATTGTAAAATAGAAATTAGTTTCATTGTGATGTG
CTTAAACTGTGGTCACAAAATAGTTCCCAATGGCTGCAGTATATCCTGAA
GCAGGGCTGCCCAGAGAAGTTGTGCGTTCCAGGAAAAAGAAACTGGGGAC
ACCTTTGTTCAAATCACACTGGGCCTATGAGATGACTTGGCAAATAAAAA
ATAAAAAATAAAAAAAAACTTGCTGTCAAGTCTGTCAAGACCAGGGTTTG
ATCCCCAGATTATATGATGGAAGAAATGGACTGACTCCTACAAGTCACCC
CTTGACTTTCACACAAGGGTTGTTTTTGATGTGCATACACATGTGCATGT
GCGCATGCACGTATGTACTCACACGAATGCACACATACAAATATATAAGT
GCATGCATTTATTTTTAAGTAGCAAGTGTTTCTTCAGCGTGGTCATGTTA
GAGATTTAGTCTTGAGTCCACACTGGTTGTGAGTGGGGCTTTAAGATACT
GTACAGCTCTCACATACACAATAACCAAAAGCCGGCCTGGTAAAAGGTTT
GGTCTTGAATAAAAGGAGTAATTTTTATATACCCCTGGTCTCTGTATTCT
TGTGAGGGAAATGGTAATAATAAAAAAATTG

NACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGTGAAACTTTCTATTTTCAG
TGACTATTCAGACAAACCAAACATGGGACTACGTGGAGCTAATCCTTTAT
TTCAAAGATTTGAATAGTTTTCGGTTCCTCTGGTCCTCATGCTCTTGCAG
TGACCTGTCATGGTAGACCACATTGACTTCCTGCCTTCAAGCTGAAAGGC
CATCTCTCAATGCCTCCTCATTTTTTCCTCACATCTATTCTGCCCCCTTT
CACCATCCTCCCAAGGACAACACTCTGTCTTAGTTATTTTTTTATTGCTG
TGATAAGACACCCATGACCAAGGCAACTTGTAGAAGAAAAAGTTTAATTC
GAGGCTCACAGTTGCAGTGGGTTAGAATTCATGACCATCACACTGGGAAG
CATGGCGCAGACAGGTAGGTATGACCCTGGAGCAGGAGGTGATTGCCTAA
ATCTTGACCCACAAGGACAAGACAGAGAGAAAGTGTAATTAGGAATGGTG
TAGGCTTTTGAAACACAAAGCTCCACCCTGAGTGACACATCTCCTCCAAG
AAGCCACACTTCCTAATCATTCTCAGTTTTTCACTAACTGGGGAACCAAG
CATTAAATATTTGTATTCATGGGCATTATTCATCGACCTCCTGTTTGTGA
AGCCCCGATGATCTACTAGAATGGGATATTCACATTTCCTCCCCAAATGG
ATACTGGTTTGACAAAAGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_h16.b1 MSMg01no414_h16.b1 CHROMAT_FILE:
MSMg01no414_h16.b1 PHD_FILE: MSMg01no414_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:32 2005
         (540 letters)



>mm_chr1_170165025_170165964
          Length = 940

 Score =  948 bits (490), Expect = 0.0
 Identities = 493/494 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccgaaaatgtcttttgatttcttttctttaacctccacccccaactgtaaccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaattcccgaaaatgtcttttgatttcttttctttaacctccacccccaactgtaaccag 435

                                                                       
Query: 65  ttttctgtaaaagtcataaagctagattccaagttccaaccatagatagatgcctattgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttttctgtaaaagtcataaagctagattccaagttccaaccatagatagatgcctattgt 375

                                                                       
Query: 125 aaaatagaaattagtttcattgtgatgtgcttaaactgtggtcacaaaatagttcccaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaatagaaattagtttcattgtgatgtgcttaaactgtggtcacaaaatagttcccaat 315

                                                                       
Query: 185 ggctgcagtatatcctgaagcagggctgcccagagaagttgtgcgttccaggaaaaagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggctgcagtatatcctgaagcagggctgcccagagaagttgtgcgttccaggaaaaagaa 255

                                                                       
Query: 245 actggggacacctttgttcaaatcacactgggcctatgagatgacttggcaaataaaaaa 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 254 actggggacacctttgttcaaatcacactgggccaatgagatgacttggcaaataaaaaa 195

                                                                       
Query: 305 taaaaaataaaaaaaaacttgctgtcaagtctgtcaagaccagggtttgatccccagatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 taaaaaataaaaaaaaacttgctgtcaagtctgtcaagaccagggtttgatccccagatt 135

                                                                       
Query: 365 atatgatggaagaaatggactgactcctacaagtcaccccttgactttcacacaagggtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 atatgatggaagaaatggactgactcctacaagtcaccccttgactttcacacaagggtt 75

                                                                       
Query: 425 gtttttgatgtgcatacacatgtgcatgtgcgcatgcacgtatgtactcacacgaatgca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  gtttttgatgtgcatacacatgtgcatgtgcgcatgcacgtatgtactcacacgaatgca 15

                         
Query: 485 cacatacaaatata 498
           ||||||||||||||
Sbjct: 14  cacatacaaatata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no414_h16.g1 MSMg01no414_h16.g1 CHROMAT_FILE:
MSMg01no414_h16.g1 PHD_FILE: MSMg01no414_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:32 2005
         (245 letters)



>mm_chr1_170003655_170004299
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggtgaaactttctattttcagtgactattcagacaaaccaaacatgggactacgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggtgaaactttctattttcagtgactattcagacaaaccaaacatgggactacgtgg 260

                                                                       
Query: 61  agctaatcctttatttcaaagatttgaatagttttcggttcctctggtcctcatgctctt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctaatcctttacttcaaagatttgaatagttttcggttcctctggtcctcatgctctt 320

                                                                       
Query: 121 gcagtgacctgtcatggtagaccacattgacttcctgccttcaagctgaaaggccatctc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 gcagtgacctgtcatggtagaccacattgacttcctgccttaaagctgaaaggccatctc 380

                                                                       
Query: 181 tcaatgcctcctcattttttcctcacatctattctgccccctttcaccatcctcccaagg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tcaatgcctcctcattttttcctcacatatattctgccccctttcaccatcctcccaagg 440

                
Query: 241 acaac 245
           |||||
Sbjct: 441 acaac 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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