Query= MSMg01no414_h17.b1 MSMg01no414_h17.b1 CHROMAT_FILE:
MSMg01no414_h17.b1 PHD_FILE: MSMg01no414_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:32 2005
(523 letters)
>mm_chr1_170165025_170165947
Length = 923
Score = 940 bits (486), Expect = 0.0
Identities = 492/494 (99%)
Strand = Plus / Minus
Query: 5 gaattcccgaaaatgtcctttgatttcttttctttaacctccacccccaactgtaaccag 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaattcccgaaaatgtcttttgatttcttttctttaacctccacccccaactgtaaccag 435
Query: 65 ttttctgtaaaagtcataaagctagattccaagttccaaccatagatagatgcctattgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttttctgtaaaagtcataaagctagattccaagttccaaccatagatagatgcctattgt 375
Query: 125 aaaatagaaattagtttcattgtgatgtgcttaaactgtggtcacaaaatagttcccaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaatagaaattagtttcattgtgatgtgcttaaactgtggtcacaaaatagttcccaat 315
Query: 185 ggctgcagtatatcctgaagcagggctgcccagagaagttgtgcgttccaggaaaaagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggctgcagtatatcctgaagcagggctgcccagagaagttgtgcgttccaggaaaaagaa 255
Query: 245 actggggacacctttgttcaaatcacactgggcctatgagatgacttggcaaataaaaaa 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 254 actggggacacctttgttcaaatcacactgggccaatgagatgacttggcaaataaaaaa 195
Query: 305 taaaaaataaaaaaaaacttgctgtcaagtctgtcaagaccagggtttgatccccagatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 taaaaaataaaaaaaaacttgctgtcaagtctgtcaagaccagggtttgatccccagatt 135
Query: 365 atatgatggaagaaatggactgactcctacaagtcaccccttgactttcacacaagggtt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 atatgatggaagaaatggactgactcctacaagtcaccccttgactttcacacaagggtt 75
Query: 425 gtttttgatgtgcatacacatgtgcatgtgcgcatgcacgtatgtactcacacgaatgca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gtttttgatgtgcatacacatgtgcatgtgcgcatgcacgtatgtactcacacgaatgca 15
Query: 485 cacatacaaatata 498
||||||||||||||
Sbjct: 14 cacatacaaatata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_h17.g1 MSMg01no414_h17.g1 CHROMAT_FILE:
MSMg01no414_h17.g1 PHD_FILE: MSMg01no414_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:32 2005
(477 letters)
>mm_chr1_170003655_170004531
Length = 877
Score = 876 bits (453), Expect = 0.0
Identities = 472/479 (98%), Gaps = 2/479 (0%)
Strand = Plus / Plus
Query: 1 ttgggtgaaactttctattttcagtgactattcagacaaaccaaacatgggactacgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggtgaaactttctattttcagtgactattcagacaaaccaaacatgggactacgtgg 260
Query: 61 agctaatcctttatttcaaagatttgaatagttttcggttcctctggtcctcatgctctt 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctaatcctttacttcaaagatttgaatagttttcggttcctctggtcctcatgctctt 320
Query: 121 gcagtgacctgtcatggtagaccacattgacttcctgccttcaagctgaaaggccatctc 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 gcagtgacctgtcatggtagaccacattgacttcctgccttaaagctgaaaggccatctc 380
Query: 181 tcaatgcctcctcattttttcctcacatctattctgccccctttcaccatcctcccaagg 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tcaatgcctcctcattttttcctcacatatattctgccccctttcaccatcctcccaagg 440
Query: 241 acaacacctgtcttagttatttttttattgctgtgataagacacccatgaccaaggcaac 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 acaacacctgtcttagttatttttttattgttgtgataagacacccatgaccaaggcaac 500
Query: 301 ttgtagaagaaaaag--tttaattcgaggctcacagttgcagtgggttagaattcatgac 358
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtagaagaaaaagagtttaattcgaggctcacagttgcagtgggttagaattcatgac 560
Query: 359 catcacactgggaagcatggcgcagacaggtaggtatgaccctggagcaggaggtgattg 418
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 catcacactgggaagcatggcgcagacaggtaggcatgaccctggagcaggaggtgattg 620
Query: 419 cctaaatcttgacccacaaggacaagacagagagaaagtgtaattaggaatggtgtagg 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctaaatcttgacccacaaggacaagacagagagaaagtgtaattaggaatggtgtagg 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
