BAC Information

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BAC

Clone NameMSMg01-414M13
Chromosome1 (Build37)
Map Location 137,632,720 - 137,808,946
singlet/doubletdoublet
Overlap geneCsrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1
Upstream geneSyt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327
Downstream gene9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414M13.T7 (MSMg01no414_m13.b1)MSMg01-414M13.TJ (MSMg01no414_m13.g1)
ACCAG510998AG510999
length783778
length of high quality
(start - end)
360 (72 - 431)246 (78 - 323)
definitionCHROMAT_FILE: MSMg01no414_m13.b1 PHD_FILE: MSMg01no414_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:56 2005CHROMAT_FILE: MSMg01no414_m13.g1 PHD_FILE: MSMg01no414_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,808,587 - 137,808,946)(137,632,720 - 137,632,961)
sequence
CTAATATTTGTCGGCGCTATACGACTCACTATATTCACAGAATCCGCGGA
ATTCTACGCAGATTGTCCCCTGAGACAGAGAGCTCATGTTGCTTGTGGAT
CAGGGGAACTCTTTGCTATTCTAAGGCGTTGGGTTCCGTGTGTAGGCAGC
TGTGTCCTGATGATGTTGCCCACGTGGAGATGGCTGACAGCCATCTAAGA
AGCCAACATCATTTTGTTCATGGCAAGTGAACCCATGTAGAGAAGAGTGG
GCGGGCAGACGCTTGTCAGGATGGACAGTATGATTCTGAGGGGTAACTCT
ACATTCAGATGTCCTCCTTTACCTCCACTCCCAGGATAAAGGACCTTTCT
AAAGGACACGGACTTGGGCATTTGTAATTTTATACAGCCTCCTCTCTTGT
TCCAGCTAACCCTACCCTCACAGAACATTTGGGGTATAGGAGGCCCTGCT
TGATACAATTCTAAGACTCCTAATCTCATTTGGCATGAAACGTCGTTCTT
GAGCCTCTAGGTACCAGAGTACCTTTTCCCCCATGATTGGCTGACTGTCC
TTTCGACTAATTAGCGTCCCCTACTTGTCTAGTTTCATACTCTGTTTGTT
CACTTCCTCTTATAGAGCTGCTGCCCTGGACGTTTCCATTCCCTTCGTGT
CCCTTATTCCCCCCACCCTGTTCCTTTTCTATTTCTCCTTCTCACTTTTT
CTTTCATTTTTATACTGTCTGTCCTCTTACCCTCCCTCCTGTCCTACTGC
TCCCATCTACCCCTCCTCCTTTCTCCTCTTTCC
NACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATCTTATGTTCTCACACATAA
CCAACTACACATAACTAGGTTAGGCCCAGGTCATGGCTAAAAATGAGACT
AATGTATGTAGCAGACATATTCTTCCAGGGGTGGCCACACTTGCTGGGTG
AAGACAAGGCAAGTGGAGGGGCTGGGGAGAGGAATGGGGGACGGTGCCAT
AGGGTCATAGAATATAAAGGGCATGGTATAGAGCCTTGGGGTGAGTGGGT
AAGGAAAGGGGAGAACAGCTTTTCACTCCTTGGGAAGCGGGAAGAGCCCC
ATCTTTGGTTTTTTACTAGCATGCAGAGAGGGTGGTGATGTCACCACAAG
CAAAATGGAGAAATCGGCAAGGATTGTGTGTGAGCTCAGGTGGGTCATCT
GCTAATGGAGGCCTCCATGTGTGCTCCCTGAGAAGCTCACTGTGCGTGCT
CCTATAGATGCTCATGGAAATGGTTTTGTGGTTAGACCCCAAAGCGACAC
GCCGCCCTCTCACGTAGGGAGTCGTCTGCCCGTTTCGCTCATTCTCTTTG
GTTAATTTTTCTGCTGGTGTCCCTCGCCTGTTCTTCTTTCCCGTTTTTCC
GTTATATGTGGTGGTTGCCGTTTTTTTTTTTTTTTTTTCTTCGCTCCGTT
GCCCCCCCGACATCCGTTGGAATGCCTCATTTGCGCTGCCATTAGTTCCC
GTTCTGCCCATATACAACCTTTTTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_m13.b1 MSMg01no414_m13.b1 CHROMAT_FILE:
MSMg01no414_m13.b1 PHD_FILE: MSMg01no414_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:56 2005
         (360 letters)



>mm_chr1_137808387_137809146
          Length = 760

 Score =  619 bits (320), Expect = 0.0
 Identities = 350/360 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagacagagagctcatgttgcttgtggatcaggggaactctttgctattctaaggcgttg 60
           ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 560 gagacagagagctcatgctgcttgtggatcaggggaactctttgatattctaagtcgttg 501

                                                                       
Query: 61  ggttccgtgtgtaggcagctgtgtcctgatgatgttgcccacgtggagatggctgacagc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggttctgtgtgtaggcagctgtgtcctgatgatgttgcccacgtggagatggctgacagc 441

                                                                       
Query: 121 catctaagaagccaacatcattttgttcatggcaagtgaacccatgtagagaagagtggg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 catctaagaagccaacatcattttgttcatggcaagcgaacccatgtagagaagagtggg 381

                                                                       
Query: 181 cgggcagacgcttgtcaggatggacagtatgattctgaggggtaactctacattcagatg 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 cgggcagacgcttgtcagggtggacagtatgattctgaggggtaactctacattcagttg 321

                                                                       
Query: 241 tcctcctttacctccactcccaggataaaggacctttctaaaggacacggacttgggcat 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcctcctttacctccacacccaggataaaggacctttctaaaggacacggacttgggcat 261

                                                                       
Query: 301 ttgtaattttatacagcctcctctcttgttccagctaaccctaccctcacagaacatttg 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 260 ttgtaattttatacagcctcctctcttgttccagctaacactaccctcaaagaacatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no414_m13.g1 MSMg01no414_m13.g1 CHROMAT_FILE:
MSMg01no414_m13.g1 PHD_FILE: MSMg01no414_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:56 2005
         (246 letters)



>mm_chr1_137632520_137633165
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatcttatgttctcacacataaccaactacacataactaggttaggcccaggtcatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatcttatgttctcacacataaccaactacacataactaggttaggcccaggtcatggc 260

                                                                       
Query: 61  taaaaatgagactaatgtatgtagcagacatattcttccaggggtggccacacttgctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaatgagactaatgtatgtagcagacatattcttccaggggtggccacacttgctgg 320

                                                                       
Query: 121 gtgaagacaaggcaagtggaggggctggggagaggaatgggggacggtgccatagggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gtgaagacaaggcaagtggaggggctggggagaggaatgggggacggtgccatagggcca 380

                                                                       
Query: 181 tagaatataaagggcatggtatagagccttggggtgagtgggtaaggaaaggggagaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaatataaagggcatggtatagagccttggggtgagtgggtaaggaaaggggagaaca 440

             
Query: 241 gc 242
           ||
Sbjct: 441 gc 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)