BAC Information

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BAC

Clone NameMSMg01-414O07
Chromosome1 (Build37)
Map Location 173,935,474 - 174,126,192
singlet/doubletdoublet
Overlap geneVangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a
Upstream geneFcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
Downstream genePea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414O07.T7 (MSMg01no414_o07.b1)MSMg01-414O07.TJ (MSMg01no414_o07.g1)
ACCAG511081AG511082
length779758
length of high quality
(start - end)		254 (71 - 324)463 (83 - 545)
definitionCHROMAT_FILE: MSMg01no414_o07.b1 PHD_FILE: MSMg01no414_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:05 2005CHROMAT_FILE: MSMg01no414_o07.g1 PHD_FILE: MSMg01no414_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,125,939 - 174,126,192)(173,935,474 - 173,935,936)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCCCAGGGATTTCCATACTCAGTGGCCAGTGCTGAAGACAGGGCTCT
AAGCCCCAGGCACCAGAATAAATCCTCCAATTACTGGCTTGTCCCTTGAT
TCCCAGGAAGCTCTCCCTTCATCCTTCCATTAGGAAGGGAGCTGGTGTGG
AGTTGGATGCTTAAAGAATCAAGCAGCTAACTAAAGGGAGGGGGCGAGTG
TGCTTTCCGTTATACTCAGAACCAGGAGACAGTCTGCAGCAGTGACGCCC
TTCCTGAAGTCACACTTCAGTCATGTTTTATAGACAGGCCAGCCTCTAAT
GAGAGGAGCAATCTTGGGAGCCCCCACAGACTTACAGAAATTAGGAGACC
TGAGGCAAAGTTGAGAGGAATTTGTTTTTCTAAAGCTCAGTACTGAGGCA
GAGAAGGGCACAGCTGACTATGTTTCCACCCTTGAGCCTTGGGAAAGCTA
CAGGTAAGCCCTAGGCTCTGAGAGCAGCCATGAATCATCTGACCCACGTC
ACCTCTTCAGCATCACTCGATCGCTTGCTCTTCCTTGCAGCCCCTTTATT
GGCTTGGATTCATATAGAACATATAGGTATTTAAACTTTCTGATATAATT
TTTAACTTGATACATTTCTTGTTTAACTTGCTTCTCAATATATTTATAGA
AATAAATTTAGGCCCTTAAATTGGGATGGTGAACGGGAATATTGCACTCC
TTGGCTATTAAATATTTTTTTTAGCAGGG

NNGGGCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCCTGATCTACCACTG
AGCTACATTCCCAGTCTCTTTATCACCCACTCAACAAGGAAGGCTCCGAG
AGCACCATTATAGGAAGCTGGCAACGAGGTTGAGGTAAGCCAATCGATAA
AAGTCAGCAGAGGCAAAATCTTCCTTTGGGGATGAAGGGGTCAGCAAGGT
AAAGGTGTAAGACTTGGAAGGTAGAAATTCTAGGGCCTTATAAAAATGAG
AAAGAGGCCTCTGAAATCCCCCGAATAGTTCTATATTCTCCCCATGCCTC
TTCCACTCTGCACAGACAAGACAGATGGAATGGGGACAGGAAAGGAAATT
CTCAAGAAGAGGTAAAGATAGGGCTGGCGAGATGGCTCAGCGGTTGAGAG
CACTGACTGCTCTTCCGAAGGTCCAGAGTTCAATTCCCAGCAACCACGCA
GTGGCTCACAACCATCTGTAATGAGATCTGACACCCTCTTCTGGTGCGTC
AGAAGACAGCTGCAGTGTACTTATTTATAATTCTTTGGGGCTGGGGGAGC
AGTGACAGAATGAGCAAGCACGGAATGGAGTTAGCAGAAGTCCTACAAAT
TCCAATTCCCAACTACCCTCTCGTATTTTTTCCTAACCCTGGAAAAGCTA
ATGGGGAATCCTTTAACTTAAACCGATATAATTCTTTATCATATAATTGT
GGGTAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_o07.b1 MSMg01no414_o07.b1 CHROMAT_FILE:
MSMg01no414_o07.b1 PHD_FILE: MSMg01no414_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:05 2005
         (254 letters)



>mm_chr1_174125739_174126392
          Length = 654

 Score =  491 bits (254), Expect = e-143
 Identities = 254/254 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagtggccagtgctgaagacagggctctaagccccaggcaccagaataaatcctccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctcagtggccagtgctgaagacagggctctaagccccaggcaccagaataaatcctccaa 395

                                                                       
Query: 61  ttactggcttgtcccttgattcccaggaagctctcccttcatccttccattaggaaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttactggcttgtcccttgattcccaggaagctctcccttcatccttccattaggaaggga 335

                                                                       
Query: 121 gctggtgtggagttggatgcttaaagaatcaagcagctaactaaagggagggggcgagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gctggtgtggagttggatgcttaaagaatcaagcagctaactaaagggagggggcgagtg 275

                                                                       
Query: 181 tgctttccgttatactcagaaccaggagacagtctgcagcagtgacgcccttcctgaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgctttccgttatactcagaaccaggagacagtctgcagcagtgacgcccttcctgaagt 215

                         
Query: 241 cacacttcagtcat 254
           ||||||||||||||
Sbjct: 214 cacacttcagtcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no414_o07.g1 MSMg01no414_o07.g1 CHROMAT_FILE:
MSMg01no414_o07.g1 PHD_FILE: MSMg01no414_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:05 2005
         (463 letters)



>mm_chr1_173935274_173936136
          Length = 863

 Score =  864 bits (447), Expect = 0.0
 Identities = 459/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcctgatctaccactgagctacattcccagtctctttatcacccactcaacaaggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcctgatctaccactgagctacattcccagtctctttatcacccactcaacaaggaag 260

                                                                       
Query: 61  gctccgagagcaccattataggaagctggcaacgaggttgaggtaagccaatcgataaaa 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctccgagagcgccattataggaagctggcaacgaggttgaggtaagccaatcgataaaa 320

                                                                       
Query: 121 gtcagcagaggcaaaatcttcctttggggatgaaggggtcagcaaggtaaaggtgtaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagcagaggcaaaatcttcctttggggatgaaggggtcagcaaggtaaaggtgtaaga 380

                                                                       
Query: 181 cttggaaggtagaaattctagggccttataaaaatgagaaagaggcctctgaaatccccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttggaaggtagaaattctagggccttataaaaatgagaaagaggcctctgaaatccccc 440

                                                                       
Query: 241 gaatagttctatattctccccatgcctcttccactctgcacagacaagacagatggaatg 300
           ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatagttccaaagtctccccatgcctcttccactctgcacagacaagacagatggaatg 500

                                                                       
Query: 301 gggacaggaaaggaaattctcaagaagaggtaaagatagggctggcgagatggctcagcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggacaggaaaggaaattctcaagaagaggtaaagatagggctggcgagatggctcagcg 560

                                                                       
Query: 361 gttgagagcactgactgctcttccgaaggtccagagttcaattcccagcaaccacgcagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttgagagcactgactgctcttccgaaggtccagagttcaattcccagcaaccacgcagt 620

                                                      
Query: 421 ggctcacaaccatctgtaatgagatctgacaccctcttctggt 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctcacaaccatctgtaatgagatctgacaccctcttctggt 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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