BAC Information

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BAC

Clone NameMSMg01-414O08
Chromosome1 (Build37)
Map Location 131,865,918 - 131,866,363
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414O08.T7 (MSMg01no414_o08.b1)MSMg01-414O08.TJ (MSMg01no414_o08.g1)
ACCAG511083AG511084
length761771
length of high quality
(start - end)
446 (76 - 521)245 (74 - 318)
definitionCHROMAT_FILE: MSMg01no414_o08.b1 PHD_FILE: MSMg01no414_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:06 2005CHROMAT_FILE: MSMg01no414_o08.g1 PHD_FILE: MSMg01no414_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTAATCTGACAGGATTGATACCAAATTCAAAAACCAACA
TTACAACAGCAAACACTAAATGGTCCAAATAGCCCACTCAGCTCAGCTCT
CTCCCCTAGACTGTGAGATCTGTGCATGTAGAAGGTTTGCAACATACAGG
GTTACCAAGACCCTTTCAAGCCCTGGTAGCAGCACTGTGATCATAAGAAC
AATGTCAGTTATAGTGCCTGTCAATTACATGTCAGGCATTATGAAACACC
TCCCTTTTCTCAGCACCACTCAGAATTGTTTTCATGTCACACCCATAGGA
AAGTTTTGAACCAGAACCATCCATTTTCATGAGAGGCAGTACCCTTTACA
ATAATTCTTGTCAAGAAATCTGTTCATGTTTTTCTCATCAACCTGACTGC
AGTTAAGTGGGAAGTATGCCGCATAACATTAGAACAATTTACCTGGTCTG
CAGAGGTATTAAACCTTGGCACATCCTGTAATTAAGTGAGCTAATCTGCT
TCTCATATTGATTCCAGGTTTGTAATTCCAACCTAGGATCCAGGCATGCG
AATCTCGCATTCTGTTGAGAGACATGCGCTCCTGTGAATAATAAATCCCC
CCCTGGTTCTTGGTTTTTTTAAATCGACATTCTTTTGGTTTATATCTTCT
TTTTTTCCGCCCTTTTTCCAACCTCCTCCCATATGTTTCTCTCTTTTTTT
ACCCTTTATTA
AATGCCCGATGATGTGGTAGGCCTGGNGGNCGCCTTTTCAACAAGTTTAG
GTGAACTATAGATTACACAAGGAATTCTTTGTTCAGTTCTGTGCCCCATT
TTTTAATGGGGTTATTGGATTTTCTGAAGTCCACCGTTTTGAGTTCTTTA
TATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCT
TTCCCAATCTGTTGGTGGTCTTTTTTTCTTTTTTTTTTTTAAATTACAAT
TTATAATTTTATTTTAAGGATTTCATTTTTAGAAATAAAAAAACAAAACA
AAACAAAACAGCTTGCTTAAGTGGCTTGATTTTGTCATATCCTAACCGGT
TAGGTATTTTCTGTAAGTTCTAAATAAGTAAAATAATATAAAAATATATT
TTCAAGTCTTTCTAGAACACAAGGAAAACCACACAAATCCTTAAATACTT
TGGGATTTTCTTTACTCTCCACAGCTGATTTCACAGATATTAAAGCTGAA
TCGCATTTATACCCTGAAGCACAGTCTTCACCAGGTCTGGAATCTCAGTT
TGTTGTGTTATGTACCAAGCAGCTCTTGCGTCGCTTCGGGGCTTCGTTAA
TGGACATCGTTTTATTCCTTCTTTTGTTCCTGTGCTTTTCGCTTACCGCT
GTGTACTCTTTTTCTTTTTTGCGTTATGCCTCGTTGCTTCCTTCTCCTTC
ACCTTTCTATTTCCGTCCCTGTCTTACAATTACTTCTTCCCACTATCCCC
CACTTTTTCTTTCCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_o08.b1 MSMg01no414_o08.b1 CHROMAT_FILE:
MSMg01no414_o08.b1 PHD_FILE: MSMg01no414_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:06 2005
         (446 letters)



>mm_chr1_131865718_131866563
          Length = 846

 Score =  785 bits (406), Expect = 0.0
 Identities = 436/450 (96%), Gaps = 8/450 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgataccaaattcaaaaaccaacattacaacagcaaacactaaatggtccaaatagccc 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttgataccaaattcaaaaatcaacattacaacagcaaacactaaatggtccaaatagccc 587

                                                                       
Query: 61  actcagctcagctctctcccctagactgtgagatctgtgcatgtagaaggtttgcaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 actcagctcagctctctcccctagactgtgagatctgtgcatgtagaaggtttgcaacat 527

                                                                       
Query: 121 acagggttaccaagaccctttcaagccctggtagcagcactgtgatcataagaacaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 526 acagggttaccaagaccctttcaagccctggtagcagcactgtgatcataagaacaatgc 467

                                                                       
Query: 181 cagttatagtgcctgtcaattacatgtcaggcattatgaaacacctcccttttctcagca 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 466 cagttatagtgcctgtcaattacatgtcaggcattatgaaacccctcccttttctcagca 407

                                                                       
Query: 241 ccactcagaattg----ttttcatgtcacacccataggaaagttttgaaccagaaccatc 296
           |||||||||||||        ||||||||||||||||||||||||||||||| |||||||
Sbjct: 406 ccactcagaattgcaaa----catgtcacacccataggaaagttttgaaccaaaaccatc 351

                                                                       
Query: 297 cattttcatgagaggcagtaccctttacaataattcttgtcaagaaatctgttcatgttt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cattttcatgagaggcagtaccctttacaataattcttgtcaagaaatctgttcatgttt 291

                                                                       
Query: 357 ttctcatcaacctgactgcagttaagtgggaagtatgccgcataacattagaacaattta 416
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ttctcatcaacttgactgcagttaagtgggaagtatgccgcataacattagaacaattta 231

                                         
Query: 417 cctggtctgcagaggtattaaaccttggca 446
           ||||||||| ||||||||||||||||||||
Sbjct: 230 cctggtctgaagaggtattaaaccttggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)