BAC Information

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BAC

Clone NameMSMg01-414P02
Chromosome1 (Build37)
Map Location 154,889,110 - 154,889,358
singlet/doubletsinglet
Overlap geneNmnat2
Upstream gene1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097
Downstream geneLamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414P02.T7 (MSMg01no414_p02.b1)MSMg01-414P02.TJ (MSMg01no414_p02.g1)
ACCAG511118AG511119
length794791
length of high quality
(start - end)
249 (75 - 323)466 (75 - 540)
definitionCHROMAT_FILE: MSMg01no414_p02.b1 PHD_FILE: MSMg01no414_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:09 2005CHROMAT_FILE: MSMg01no414_p02.g1 PHD_FILE: MSMg01no414_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGGA
ATTCTTCTCATATTTCCTCCCTGACAGACACTGCAGCACAGCTCCCTCAA
GTGTGCTTTCATGCCAGCTTGATTTGCACTCATGTGTATGCATGCACGTG
CGTGTATGTGTGTGCACACACAAGCGTATGTCTATTAAAAATAAACACCA
GCGCTAATAAACAAATATAGCAAGGCTATAGGTTCCATGGAGCAAGGACT
GGGTTTGTTTGGTTCACCTCTGGAACATCTGCACCCTAGCTGGGGATCCA
GGATAGAGCAGGGCCTTCTGAGTCTTTTTATGGGTCTGGAAATAAAGTAA
GAGAAACAAGTCTGAATGCATTTCCACATCACAAGTGCCAGTTTGTAGTC
TACTGTGCAAATATTTAATTTCATTTTCTTATGCCCAAACTCTACTGAGC
TCATGGTGCCTGGCTCCCCCTTGGCAAGACTTTCAGAGCTGGCATTTCTG
CTACCCTCTGATAAATTTCAGAACTTCTTCTCTCCTTATCTCCTTTTCTA
CCTCCTCTCACTCATAGTTCAGAACTTCTTCCTGATGCTGAAGGAAATAG
AGATTGCCATCTCCTGTCATTCTTCTTGGGAAATCTGCCATGTTCATGTG
CCTTGTCAGGTAATTTGTTTCTTTTGTTCTTCCCCTACTTAACCCTGATG
TTAATCTTTTAATCCCGTGCCCTTTCCCTATTCTATTTCTTTTCACCTTT
TCTTATGTACTATCCTTCCCCTTTTTTTTCTTTCTTCCTCTTAT
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACTCCTAGACATACATGTACAATAG
ATAAAAATGGATAAAATGCACAAAACCTAGTGTGCTGAAGTTCATGCAAA
CATTACCCATCATTGCTAAGAACTGGGAACACACCAAATGTCTACCAGCT
AATGAATAGATAAGCAAATTATGGTAAATCCATATGGTGGGATTATATTC
AGCCATCAGGATGATATATACTCTGTGATATGACATGGGCAGACCTTGAA
AACTTATGGTATGTGAAATAAGTCAGTCACAAATGGCCTCAAGTGATATG
ATTTCAATGATAAGAAATATCCAGAGTAGTCAAATCTAATGAGACAGAAA
GTACATCAATGTCCACATCTGGCTGGGGGTGGGAGCTGAGGGAGGTTGTG
GCTTGGCTCTTTTAGGAGCATTGAAAATGGCTAAGATCTGTTCTTTGTGA
TAATGGTCATATGATTTCCAAGAACTGATTACAAACCAGTGAACGGTTCA
CCATACACAGGTGAATTCCATGACATATGACTTATATCTCCATTACAGCC
CTACCTAATGGTAGTAGCCCGAACATATTGCAATATCAGGTACACAGGTT
ATTCCTCCATTCCTCAAAGACCTGACTTGATTTATACTATTTTTTAAAAA
AATTTATTGTTTTTTCTTTTTAACAAAATACATTTCTGTTTTACTTGTTC
CAAATCTCTATCATATTTTTAATTAGCTCCGGTCATGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_p02.b1 MSMg01no414_p02.b1 CHROMAT_FILE:
MSMg01no414_p02.b1 PHD_FILE: MSMg01no414_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:09 2005
         (249 letters)



>mm_chr1_154888910_154889558
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacactgcagcacagctccctcaagtgtgctttcatgccagcttgatttgcactcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cagacactgcagcacagctccctcaagtgtgctttcatgccagcttgatttgcacacatg 260

                                                                       
Query: 61  tgtatgcatgcacgtgcgtgtatgtgtgtgcacacacaagcgtatgtctattaaaaataa 120
           ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 261 tgtatgcatgcacgtgcgtgtttgtgtatgcacgcacaagcgtatgtctattaaaaataa 320

                                                                       
Query: 121 acaccagcgctaataaacaaatatagcaaggctataggttccatggagcaaggactgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaccagcgctaataaacaaatatagcaaggctataggttccatggagcaaggactgggt 380

                                                                       
Query: 181 ttgtttggttcacctctggaacatctgcaccctagctggggatccaggatagagcagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtttggttcacctctggaacatctgcaccctagctggggatccaggatagagcagggc 440

                    
Query: 241 cttctgagt 249
           |||||||||
Sbjct: 441 cttctgagt 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)