Query= MSMg01no415_e20.b1 MSMg01no415_e20.b1 CHROMAT_FILE:
MSMg01no415_e20.b1 PHD_FILE: MSMg01no415_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:38 2005
(488 letters)
>mm_chr1_35786191_35787078
Length = 888
Score = 882 bits (456), Expect = 0.0
Identities = 477/484 (98%)
Strand = Plus / Plus
Query: 5 gaattcactcggttcactgagcagagtgacccggtgacatacactgtgtcctcgtgtcct 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcggctcactgagcagagtgacccggtgacatacactgtgtcctcgtgtcct 264
Query: 65 tttttgaaaccgggtctcatgtaaagcagtgtagctgagaatgatcatgaactcgcaatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttgaaaccgggtctcatgtaaagcagtgtagctgagaatgatcatgaactcgcaatc 324
Query: 125 cctccaaagttctggggttccaagactgtgccaccacaagaggtttatatggtgctaggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctccaaagttctggggttccaagactgtgccaccacaagaggtttatatggtgctaggg 384
Query: 185 ttttcgtatatactaggcaaacgctctatcaactcaattacctctctaactctcctggtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttcgtatatactaggcaaacgctctatcaactcaattacctctctaactctcctggtg 444
Query: 245 gttttctaggcaaaatttacactagacacttaattttcaaggatcctggtcttagaattt 304
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 gttttctaggcaagatttacactagacacagaattttcaaggatcctggtcttagaattt 504
Query: 305 ccaacttgaggaactgtggcaagtgagctggttctagcataacccatctgctctgcagcg 364
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaacttgaagaactgtggcaagtgagctggttctagcataacccatctgctctgcagcg 564
Query: 365 ttatggcaatggcatgagtaaaccaacactgttatagcttcagtagacatcacctctgat 424
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 ttatggcaacggcatgagtaaaccaacactgttatagattcagtagacatcacctctgat 624
Query: 425 tttcatagatcccgcagccacagatgctatgccaggaggaacacagggtccatgctttcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttcatagatcccgcagccacagatgctatgccaggaggaacacagggtccatgctttcc 684
Query: 485 tttc 488
||||
Sbjct: 685 tttc 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_e20.g1 MSMg01no415_e20.g1 CHROMAT_FILE:
MSMg01no415_e20.g1 PHD_FILE: MSMg01no415_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:39 2005
(436 letters)
>mm_chr1_35958391_35959226
Length = 836
Score = 588 bits (304), Expect = e-172
Identities = 337/350 (96%), Gaps = 4/350 (1%)
Strand = Plus / Minus
Query: 1 catactctaaggtacaaatatcaacagactcgaagagactggcaactatttctatggtaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 346 catactctaaggtacaaatatcaacagactcgaagagactggaaactatttctatggtaa 287
Query: 61 tagtggaagcttcagtatttccctgttagtgaagctggagtatctttacagagataaaga 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 286 tagtggaagcttcagtatttccctgttagtgaagctggagcatctttacagagataaaga 227
Query: 121 tggcatagaggactcaagtaacagtctaaaacaactggacctcactggggtgacacacac 180
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 226 tggcatagaggactcaagtaacagtctaaaacaactagacctcactggggtgacacacgc 167
Query: 181 ctttaataccagcacttggggagcagagtcaggtggatttttgtgagttcaaggccagtc 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 166 ctttaataccagcacttggggagcagagtcaggtggatctttgtgagttcaaggccagcc 107
Query: 241 ttttctaaacagcaagttccaggtcatgcagggctgtacagaccttgtctcaaaacaaac 300
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 106 tggtctaaacagcaagttccaggtcatgcagggctgtacagaccttgtctcagaacaaac 47
Query: 301 aaacaaatagacagacaaacaaataacaccccaaacacaacagaaggagg 350
||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 46 aaacaaatagaca----aacaaataacaccccaaacacaacagaaggagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
