Query= MSMg01no415_n21.b1 MSMg01no415_n21.b1 CHROMAT_FILE:
MSMg01no415_n21.b1 PHD_FILE: MSMg01no415_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:22 2005
(444 letters)
>mm_chr1_83282675_83283523
Length = 849
Score = 810 bits (419), Expect = 0.0
Identities = 437/445 (98%), Gaps = 5/445 (1%)
Strand = Plus / Plus
Query: 5 aacaaaccttgttattagcttcagtatcaagaatatataagattatatggttactaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aacaaaccttgttattagcttcagtatcaagaatatataagattatatggttactaagca 264
Query: 65 gcaaagcttttctaatcactgatggatcacattgtttaaaaagttattattataaacacg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaaagcttttctaatcactgatggatcacattgtttaaaaagttattattataaacacg 324
Query: 125 acaattctaatacaaagcatctcaaagaggatatttgagagaaaaatagttttgattttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaattctaatacaaagcatctcaaagaggatatttgagagaaaaatagttttgattttt 384
Query: 185 ttgtagaatgataggttttttt-atatataattttgtcctctttct----aataaaacta 239
|||||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct: 385 ttgtaggatgataggttttttttaaatataattttgtcctctttctttctaataaaacta 444
Query: 240 aagttcattttaaacaatgtgctttttaccaatctcatttctcaagttggtgtttcaaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagttcattttaaacaatgtgctttttaccaatctcatttctcaagttggtgtttcaaag 504
Query: 300 tagaaatgcatttattctgtttcatagatgggtgaatccaggctcaggaagacccaaatt 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 tagaaatgcatttattctgtttcatagatgggtgaatccaggctcaggaagacccagatt 564
Query: 360 ctttagcttccaatcccaactgctgactgttcaggaatattgtttctctggctgataaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctttagcttccaatcccaactgctgactgttcaggaatattgtttctctggctgataaga 624
Query: 420 taaaaattatcatgtactatgggat 444
|||||||||||||||||||||||||
Sbjct: 625 taaaaattatcatgtactatgggat 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 849
Length adjustment: 10
Effective length of query: 434
Effective length of database: 839
Effective search space: 364126
Effective search space used: 364126
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_n21.g1 MSMg01no415_n21.g1 CHROMAT_FILE:
MSMg01no415_n21.g1 PHD_FILE: MSMg01no415_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:22 2005
(485 letters)
>mm_chr1_83460334_83461218
Length = 885
Score = 884 bits (457), Expect = 0.0
Identities = 478/485 (98%)
Strand = Plus / Minus
Query: 1 caagctagtgcggtctctataatgggacctttaaaaaagaaaagaaagaaaggggaagga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 770 caagctagtgcggtctctataatgggacctttaaaaaagaaaagaaagaaaggggaagaa 711
Query: 61 agggaaggaagaagtgatgagggaaactggaaataatcaataatcactcaaacacccaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 agggaaggaagaagtgatgagggaaactggaaataatcaataatcactcaaacacccaat 651
Query: 121 aatttctctcttcttccagattgaaaccaacttgccttcaaagctgatctctctgcctgg 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aatttctctctttttccagattgaaaccaacttgccttcaaagctgatctctctgcctgg 591
Query: 181 cgatgcttagaacagggaagtgagcttgtctaaccctgaagtgagaatgtgaggaaatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cgatgcttagaacagggaagtgagcttgtctaaccctgaagtgagaatgtgaggaaatgg 531
Query: 241 gaattcatatcgcctggagggatgaacaactggcacctttgattggagagcaactctgcc 300
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 530 gaattcacatcgcctggagggatgagcaactggcacctttgattggagagcaactctgcc 471
Query: 301 gatattaataaatgctagagagaacgatgtaagctgtttatctctgtaccagccgctctc 360
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 470 gatattaataaatgctagaggggacgatgtaagctgtttatctctgtaccagccgctctc 411
Query: 361 ctctagagctagataaagcctcctagcagtctctcatacatggatagaaatattatagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctctagagctagataaagcctcctagcagtctctcatacatggatagaaatattatagtg 351
Query: 421 agaacactgatcacaatacttgggaaaacgcccacatgcctatcaatgggcatatggtat 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgaacactgatcacaatacttgggaaaacgcccacatgcctatcaatgggcatatggtat 291
Query: 481 agcca 485
|||||
Sbjct: 290 agcca 286
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
