BAC Information

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BAC

Clone NameMSMg01-415O08
Chromosome1 (Build37)
Map Location 96,538,149 - 96,538,387
singlet/doubletsinglet
Overlap genenone
Upstream geneBok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
Downstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415O08.T7 (MSMg01no415_o08.b1)MSMg01-415O08.TJ (MSMg01no415_o08.g1)
ACCAG511844AG511845
length722718
length of high quality
(start - end)
239 (68 - 306)238 (72 - 309)
definitionCHROMAT_FILE: MSMg01no415_o08.b1 PHD_FILE: MSMg01no415_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:24 2005CHROMAT_FILE: MSMg01no415_o08.g1 PHD_FILE: MSMg01no415_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXAATCAATACAGGATCCGCGGAATTCA
GGGTCTCATTAATTTTCAAGTTTGAACAGTGTTCTAGCACCCAGGTTCAT
TTGTTACTTATCTACATTATACAAATTTTACATCATTATTATCTTTTTTA
GCGTCAGTCATTTATACATTTATTTTGTATTTCAAAAAACTGAAAATTTA
TTGTGGAATATTCCACATAACTTTACAGGTGATGTACAACTATAATGATG
ACCAAACAGACAGTCATGCAACAAGCATAAAGCCTGCAATACCAATAGAT
ACAGTATTTATTCTTATTATGAAAGACATGGATAAAGAGGAGGCTTCTCA
ACTGAGGAAACTCAAATGGCTGAAAAGCACCTAAAGAAATGTTCATTAAC
CTTATTCATCGGTAAATGTGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATAGCTAAGATGAAAAAACTCAGGTGACAGCAGATGCT
GGAGAGGATGTGGAGAAAGAGAAACACTCCTCCATTGCTGGCGGGATTAC
TAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCATAAAACT
GGACATAGTACTTACCTGAGGATCCTCCAATACCACTCCTGACAATGTGT
CACCTTTATTCTATGAACTATTACTGAGCTCTTAATAATACTTGACTTCC
TGAACTTTACAGGGCCACTGCG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTACCAGCGAAATTCAGGTCTTCATGATTGTGCAACAAGTGGTCT
TCCCTCGTGAGCCATCTCTCCAGCTCCAGCTCCACACACTTTTGATTTAG
TTAAGGATCCAGATATGGCTGTCTCTTGTGAGACTATGCCGGGACCTGGT
AAACACAGAAGTAGATGCTCATAGTCAGCTATTGGATGGAGCACAGTGCC
CCCAATGGAGGAGCTAGGGAAAGTACTCAAGGAGCTGAAGGGATCTGCAA
TCCTATAGTTGGTTATACAATATGAACTCACCAATACCCGCCCTTGAGCT
CGTGTCTCTAGCTGCATATGAATCAGAAGATGGCCTGGTCGGCCATCAGT
GGAAAGAGAGGCCCATTGGTCGTGCAAACTTTATATGCCTCAGTACAGGG
GAACGCCAGGGTCAAGAAGTGGGAGTGGGAGCGTGTGGGAAACTTTGGGG
ATAGCATTTGGAAATGTAATTGAAATAAATACCCAATAACAATATGCGAA
AAAAGAACTAGCCTAACCATTTTGTTTACTTGGATAACGTTCATTCATGC
TTCCTTTGCGGTCGAACATCCCTCAGCGACGCTGACCCTTTCTTTTTTTT
CCCTCCACCCATAGCCTGGTGCTCTTCTCCCGCTTCTTGATGGCCTTTGT
CTTGCTCCCTTTCTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_o08.b1 MSMg01no415_o08.b1 CHROMAT_FILE:
MSMg01no415_o08.b1 PHD_FILE: MSMg01no415_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:24 2005
         (239 letters)



>mm_chr1_96537949_96538587
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtttgaacagtgttctagcacccaggttcatttgttacttatctacattatacaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aagtttgaacagtgttctagcacccaggttcatttgttacttatctacattatacaaatt 380

                                                                       
Query: 61  ttacatcattattatcttttttagcgtcagtcatttatacatttattttgtatttcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttacatcattattatcttttttagcgtcagtcatttatacatttattttgtatttcaaaa 320

                                                                       
Query: 121 aactgaaaatttattgtggaatattccacataactttacaggtgatgtacaactataatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aactgaaaatttattgtggaatattccacataactttacaggtgatgtacaactataatg 260

                                                                      
Query: 181 atgaccaaacagacagtcatgcaacaagcataaagcctgcaataccaatagatacagta 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atgaccaaacagacagtcatgcaacaagcataaagcctgcaataccaatagatacagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)