XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TGGGTTTTGACCTGAGCAACTATAAGGAATGGTATAGTCATGTCCTTTCG
AGAGACACACAGAGAGAGTAGGCTTTAGATGAAGAACTAGTGAATTTCAC
TTTGAGCATGTCTAGTTTCAAAGGTTTGTTACATACTAGACTATAATATC
AAATATGTTATAATAACACTATATATAATTATATATTAAATGTATTATTA
TACATTCACCTATGTAATATTATATGTTATAAAATACATACACACACATA
CACACACACACATATATATATATACACACATATATGTATATATGTATGTC
TGGAGTTCAATAAGAAATATAGGCTCAAAATATAAATCAAAGAGTGGCAT
TCTGATATAAGGATGGATAGGATTATTCAGTGAGAAGAGTCATAACTATG
GATAGATGTAACAAAGGACACTTCCATTCCAATAAGAAGTAAGGAATACT
GGGAAACCCATGCATCATACACACACACACACACACACACACNCGGAGAG
AGACAGAGACCGAGACCGAGACAGAGACCGAAAGACCGAATGCCGCAAAG
ACCGAAAGGCCGAGACCGTAATGACCGAGACGGAAGGACCGAGACTGTAC
GGACTTACGGTACATTTCCCCTTTGGTGTAAGGGCCGATATGATCAAAAG
GTGTGTGTCTCTACAACCTTCGGTCCCCCCCTCATCCTCTTCTCCTGTAA
CAAN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAAATAAATTCCTTGTCTGTGGATAACTGATCATC
CACAAGAATACCAAGACAACTAATTAGGTGGGGGAGGGGGGGGAGTGTTN
NNNNNNNNNGNNGGNNTNTNNNNNNCNTGCCNTTNNTTTTTTNTGTTTTT
NTNNNTTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTCTCTNTNNTTCTTG
CGTCCTCCCCTCCCCTTCCCCCCCCCCCCCCCCGTCCTTTTTTTTCTCTC
CCCCCGTCCCCCCCCCTCTCCCTCCTTCCCCCCCCTCCTTCTTTCCTCCC
CCCTCCCCCCCTTTCCCCCCTCCCCCCCCTTCCCCCTCCCTCTCTCCTCC
CCCCCCTCTCCCCCTCCCCCCCTCCCTTCCCTTTCCTCTTCCCTTCTTCT
CTCCCCCCTTCCCCCCTCCCCCTTTCCCCTCTCTCCCCCCTCCTCCCCTT
CCCTCTCCCCTTCCCCTCCTCCTCCTCCCTCCCCCTCCTCCCCTCTCCCC
CCCCCCTTCTCCCCCCCCTCTCCCCCCTTCCCCCCTTCCTCCCCCCCCCC
CTCCCCCCTCCCCCCCCTTCCCTCCCCCCCCCCCTTCCCCCCTTCCCCCT
CTTCCCCTTCCTCCCTCCCCCCCTCCCCTCTTTCCTCCTTTTCCCTCCTC
TTTCTCCTTCTCCCTTCCCTCTCCCTCTCCCCCCCT

Query= MSMg01no415_p04.b1 MSMg01no415_p04.b1 CHROMAT_FILE:
MSMg01no415_p04.b1 PHD_FILE: MSMg01no415_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:28 2005
         (531 letters)



>mm_chr1_178242639_178243569
          Length = 931

 Score =  880 bits (455), Expect = 0.0
 Identities = 485/503 (96%), Gaps = 15/503 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatgggttttgacctgagcaactataaggaatggtatagtcatgtcctttcgag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggaattcatgggttttgacctgagcaactataaggaatggtatagtcatgtcctttcgag 272

                                                                       
Query: 64  agac-acacagagagagtaggctttagatgaagaactagtgaatttcactttgagcatgt 122
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 273 agacaacacagagagagtaggctttagatgaagaactagtgaatttcactctgagcatgt 332

                                                                       
Query: 123 ctagtttcaaaggtttgttacatactagactataatatcaaatatgttataataacacta 182
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 333 ctagtttcaaaggtttgttacatactaaactataatatcaaatatgttataataacacta 392

                                                                       
Query: 183 tatataattatatattaaatgtattattatacattcacctatgtaatattatatgttata 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tatataattatatattaaatgtattattatacattcacctatgtaatattatatgttata 452

                                                                       
Query: 243 aaatacatacacacacatacacacacacacatatatatatatacacacata--tatgtat 300
           ||||||||||||||||||||||||||||||            ||||| |||  |||||||
Sbjct: 453 aaatacatacacacacatacacacacacac------------acacatatatgtatgtat 500

                                                                       
Query: 301 atatgtatgtctggagttcaataagaaatataggctcaaaatataaatcaaagagtggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatgtatgtctggagttcaataagaaatataggctcaaaatataaatcaaagagtggca 560

                                                                       
Query: 361 ttctgatataaggatggataggattattcagtgagaagagtcataactatggatagatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgatataaggatggataggattattcagtgagaagagtcataactatggatagatgt 620

                                                                       
Query: 421 aacaaaggacacttccattccaataagaagtaaggaatactgggaaacccatgcatcata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaaaggacacttccattccaataagaagtaaggaatactgggaaacccatgcatcata 680

                                  
Query: 481 cacacacacacacacacacacac 503
           |||||||||||||||||||||||
Sbjct: 681 cacacacacacacacacacacac 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)