BAC Information

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BAC

Clone NameMSMg01-416B03
Chromosome1 (Build37)
Map Location 85,261,883 - 85,262,232
singlet/doubletsinglet
Overlap geneC130026I21Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416B03.T7 (MSMg01no416_b03.b1)MSMg01-416B03.TJ (MSMg01no416_b03.g1)
ACCAG511976AG511977
length706731
length of high quality
(start - end)
119 (97 - 215)347 (58 - 404)
definitionCHROMAT_FILE: MSMg01no416_b03.b1 PHD_FILE: MSMg01no416_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:37 2005CHROMAT_FILE: MSMg01no416_b03.g1 PHD_FILE: MSMg01no416_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:37 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTACCTATATCGAGAGGATCCGCGGAATTCAATAACTCTCTTAAAGAAAT
ACAGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACCGGAAA
ACACTGCTAAAGAGTTACAAGTCCTTAGAGAAAAACAGGAAAACACAACC
AAACAGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGT
GATGGAAATGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAA
TAAAGAAAACCCAAAGTGAGGCGACGCTGGAGATAGAAACCCTAGGAAAG
AAATCTGGAACCATAGATGCCAGCATCAGCAACAGAATACTAGAGATGGA
AGAGAGAATCTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAGCAA
TCGAAGAAAATGGAAAATGCAAAAAGATCCTAACTCTGAACATCCAGGAA
ATCCAGGACACCATGAGAAGACCAAACGTACGGATAATAGGAGTGGATGA
GAGTGAAGATTTTCAACTCAAAGGACCAGCAAGCATCTTCTACGATGTTA
TTGAAGAAAACTTCCCATATCTACAGAAAGAGATGCCCGTGAACATACTA
CAAGCCTACTGAACTCCAAGTAGACTGCACCAGAAAAGAAATTCCTCCTG
ACGCTTAATAATCCGAACACCCAATGCGCTGATTAAAGATCGAACACTTG
CAGCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCACAGACAGTGCAAGGGTAGCAAAGATTAATGCAGCCATCCCT
ATGCCTGTCAGATTGATAACCACAACAAAAATGTCTTCAGAGACAGAAAC
TGCAAACACTCAGAGACAGATACCTCCACCTGCTTATATGAAAGGCACTG
AGCCAGTGATTAACCACCCTATTTACTCCCAAAAGACACAGCACACTGCT
GGTTATCACTAGTGGACTTGACCAAATGTCACAGGAGAAATGGTGCTTAG
GATATCTGCAGGAGCAGAAGTAGCCCTGACTGAGTCCCTGTTGGGGGCAT
CACACACCTTCGTCTCATCTTTTCTATTTTTATTTTGAATTATGTATGCA
TGAGTCTGTCTCAGTGTGCTTCCTGCGCGCAAATACAGTGTCCATGGAAG
GCAAAGAAGGCTGTCTGACCTGGAGTTGGCATGAGAGGCAGTTGGAAGCC
CTAGGATAGGTGCTGGGGACCCGACCCATGCCCACTACTAGGACAATATG
AGTGCTTAAACCTGGGTCATCTCTCCTATGCTTTGTGTGTGTGTGTGTGT
GTGTGTGAATTTATCGGAACCTATTGANTTGTTTTCCTATATTCTTGGTA
ATAAAAATTACTTAGAGCTTGCTTTGCCTGTTCTCCTCATTCATAATACA
TAACACGTTCCATAATTCCCTTTTTTCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_b03.g1 MSMg01no416_b03.g1 CHROMAT_FILE:
MSMg01no416_b03.g1 PHD_FILE: MSMg01no416_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:37 2005
         (347 letters)



>mm_chr1_85261683_85262432
          Length = 750

 Score =  590 bits (305), Expect = e-173
 Identities = 338/351 (96%), Gaps = 5/351 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagacagtgcaagggtagcaaagattaatgcagccatccctatgcctgtcagattgat 60
           |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 cacagacagtgcaaaggtagcaaagattaatgcagccatccctacgcctgtcagattgat 260

                                                                       
Query: 61  aaccacaacaaaaatgtcttcagagacagaaactgcaaacactcagagacagatacctcc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccacaacaaaaatgtcttcaaagacagaaactgcaaacactcagagacagatacctcc 320

                                                                       
Query: 121 acctgcttatatgaaaggcactgagccagtgattaaccaccctatttactcccaaaagac 180
           |||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 321 acctacttatatgaaaggcactgagccagtgattaaccacgctatttattcccaaaagac 380

                                                                       
Query: 181 acagcacactgctggttatcactagtggacttgaccaaatgtcacaggagaaatggtgct 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcacactgctggt-atcactagtggacttgaccaaatgtcacaggagaaatggtgct 439

                                                                       
Query: 241 t----aggatatctgcaggagcagaagtagccctgactgagtccctgttgggggcatcac 296
           |    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcttaggacatctgcaggagtagaagtagccctgactgagtccctgttgggggcatcac 499

                                                              
Query: 297 acaccttcgtctcatcttttctatttttattttgaattatgtatgcatgag 347
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acaccttcgtctcatcttttctatttttattttgaattatgtatgcatgag 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 750
Length adjustment: 9
Effective length of query: 338
Effective length of database: 741
Effective search space:   250458
Effective search space used:   250458
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)