Query= MSMg01no416_e01.b1 MSMg01no416_e01.b1 CHROMAT_FILE:
MSMg01no416_e01.b1 PHD_FILE: MSMg01no416_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:50 2005
(479 letters)
>mm_chr1_139414508_139415387
Length = 880
Score = 781 bits (404), Expect = 0.0
Identities = 447/470 (95%), Gaps = 20/470 (4%)
Strand = Plus / Minus
Query: 13 gaattctttaagctgagatgtgc----atgtggctaaagcccccattgtaagagatagca 68
||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 579 gaattctttaagctgagatgt-ctccaat-tggctaaagcccccattgtaagagatagca 522
Query: 69 attgactaaccagtgtgtttgaaaattcctcacatcattaagtagcaatagcagcagtta 128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gttgactaaccagtgtgtttgaaaattcctcacatcattaagtagcaatagcagcagtta 462
Query: 129 gcacttatgaaatcattactgtgtaatatatattataaatcttactagttcagcactatg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcacttatgaaatcattactgtgtaatatatattataaatcttactagttcagcactatg 402
Query: 189 aagcatgaagtattatttctgtcggatacagaaactaatcaaactagagaagttttccta 248
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 401 aagcatgaagtattatttctgttggatacagaaactaatcaaactagagaagttttccta 342
Query: 249 ggaaagaaccaggatttcagaagttgtagttaaatgaggaaaaaatgcataggctatgca 308
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 341 ggaaagaaccaggatttcagaagttgtagttaaatgagaaaaaaatgcataggctatgca 282
Query: 309 gatgctaaaaactagaaagttgaaaaaaaatcaggattaaaaagaagctgtgatatcttc 368
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 281 gatgctaaaaactagaaagttg-aaaaaaatcaggattaaaaagaagctgtgatatcttc 223
Query: 369 atgacttgtcaaaaaaaacaaaacaaaacaaaaaacaaaacaaacaaacaaaaaa-aaaa 427
|||||||||| ||||||||||||||||||| |||||||||||||| ||||
Sbjct: 222 atgacttgtc-aaaaaaacaaaacaaaaca-----------aaacaaacaaaaaacaaaa 175
Query: 428 acaaaaaaacctgaccatgatgctaagaaaactatcatgaaagtcaattt 477
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 acaaaaaaacctgaccatgatgctaagaaaactatcatgaaagtcaattt 125
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 880
Length adjustment: 10
Effective length of query: 469
Effective length of database: 870
Effective search space: 408030
Effective search space used: 408030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_e01.g1 MSMg01no416_e01.g1 CHROMAT_FILE:
MSMg01no416_e01.g1 PHD_FILE: MSMg01no416_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:50 2005
(550 letters)
>mm_chr1_139288486_139289435
Length = 950
Score = 808 bits (418), Expect = 0.0
Identities = 505/546 (92%), Gaps = 24/546 (4%)
Strand = Plus / Plus
Query: 5 ctgtgaatcagtgagttagcattctgatgtctggcctgtcttgtatatgtttcagcattt 64
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 ctgtgaatcggtgagttagcattctgatgtctggcctgccttgtatatgtttcagcattt 264
Query: 65 atgaatcaggctgtcattgtctgattctcttttaatactgcaggaacttaagactaatga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgaatcaggctgtcattgtctgattctcttttaatactgcaggaacttaagactaatga 324
Query: 125 taagctaatatgtgtctttagaatgagcgcttcctttgttggccgaacatctaccaccac 184
|| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 taggctaacatgtgtctttagaatgagtgcttcctttgttggccgaacatctaccaccac 384
Query: 185 atatctatatattatctgcctgtctgtctgtctgtctatccatccatctagctattatct 244
|||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 385 atatctatatatcatctgtctgtctgtctgtctgtctatccacccatctatctatcatct 444
Query: 245 atcttaactatttatttatatttttatctaccaatcatctctatctgtgaaatgtgacca 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 atcttaactatttatttatatttttatctaccaatcatctctctctgtgaaatgtgacca 504
Query: 305 actaattaaaagatattatagataaaatgtgcactgtggcatgaatgcttctgtatacac 364
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 actaattaaaagatgttatagataaaatgtgcactgtggcatgaatgcttctgta--cac 562
Query: 365 acacacacacacacacacacacacacacacacacacacacagaggaaagtagtagcaaaa 424
|||||||||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct: 563 acacacacacacacacacacacacac-c---------cacagaggaaaggagtagcaaaa 612
Query: 425 cacccaatgttgacgcctt-tggcttccacctgcatgcatatacatatgttcctgcatac 483
|||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 613 cacccaatgttgac---ttgtggcttccacctgcatgtgtatacatatgctcctgcatac 669
Query: 484 acacatgcacacatgcacacattcataggaacaaatacatatttcactacagagataaat 543
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 670 acacatgcacacat--------tcataggaacacatacatatttcactacagagataaat 721
Query: 544 gactct 549
||||||
Sbjct: 722 gactct 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
