BAC Information

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BAC

Clone NameMSMg01-416H22
Chromosome1 (Build37)
Map Location 135,135,713 - 135,304,215
singlet/doubletdoublet
Overlap genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13
Upstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
Downstream geneLOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416H22.T7 (MSMg01no416_h22.b1)MSMg01-416H22.TJ (MSMg01no416_h22.g1)
ACCAG512298AG512299
length725748
length of high quality
(start - end)		485 (18 - 502)454 (74 - 527)
definitionCHROMAT_FILE: MSMg01no416_h22.b1 PHD_FILE: MSMg01no416_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:08 2005CHROMAT_FILE: MSMg01no416_h22.g1 PHD_FILE: MSMg01no416_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,135,713 - 135,136,190)(135,303,870 - 135,304,215)
sequence
CTTCCTATATTCAGAGGATCCGCGGAATTCTGTAGGCATATCCTGGAGGA
GCTAGGATCAGGAGTGGGCCTGTTCTAGAGCCCTAAACCTCAAGACTAAT
GCAAATTCAATGCAGTGCAAACAAACGCAAGAGTTAGCTTGTAGATGGAG
CATATGAAGGGAATTTCACGCTGCATAACTGAAACCAGGCTGGCTCAACT
TCCATCTTGGGCCACCTCCAGCTCTCTAGCTTCCTTAGCAGAGCAGAGGC
AGATCACCTGATCTGGCTCCTGTGTGGGCATCAGAGGTGTCCAGGGGGTG
AAGGCAAATAGATGATTGGCTGGTGCTTTGGCCCAGGATGGTGCCTTGAT
TTCCTTTTTCTTCTGTGCCAAATGTCAGGTTATCCTGGGGGGAAAGTAGA
AAGATTTGGGGGTCCCAGGTTAATCCTTGTTTTAGGAAGCAAATGTCCAG
CCACAATCCTTTGTCCTCTGGTTGCTCTTTCTCCCGTTGCCTCTACAGTG
CGGGCTGGAGAGGGAGGAGGGNTTGGCTAGTACAGTTGTCAGACAGCTGT
GACTCCCTTTTAAAAAAAAACCTTTAAAAACAAGATGTTTTCTTGCGTAA
CCACCGACCCATTATCAAATGGCTGAAACCCCCCGGGACATTGCTACCAT
TCCTTTTATCCACAATACAGGCCCAATTTTCCCTTTTTACCTTAACCTAA
AAAACCCCGTTCTAAGATATTTCAG

CAATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCATTATGCTCCTCCCTGTCCCTTTG
ACCCCTGCATTCCTAGTCCCTCACAAGTGACAACATATGGTGATTTGTCC
TTTACATGTGTGGCTTTTTTCACTTAGCGTGTTCCATGGTTCATTCAAGC
TGCAGTGTGTCATTTCCTTCCTTTCTAAGGCCAAGAATCCGTTGTATCTA
TAAACTGCGTATTGTTGGTTTGCTTCCGCCTTTTGGTTGTCACAGTGTTG
CTCTAGAGGAAGAGCTTTCTTTCAGTTCTTGGGGCTGTATATACCTGGGA
GGGATTGCTGGATCAGATGGGAATTCTGTGTCCATGTATTTGTTGTGCAT
TTCTGTAACCCCAGCTCTGGGTGGTCTCCCCACTGACTACCCGTGTGAAA
ACAGCCTTCCCAATGCCTGCTGCCTGCCAGTCTATTTCAAGATGGGGGCC
AGGGCAGTCCCATGCCCTTCATTGGCCAGGAAGATAGTGTGGATACAATT
GGGGCTTGTTGCTTGACCCTGCAAGAGCTGTGAACAGGTCACAGAACTCC
TCGCCTGTACTGATCTGGGCTCTATGGTCTGGGAAACCTTTCCTGCCAAG
GTTGCTGTGAAGATTCTTTAACTGGGGAAGAAAAACCTGGCCCCACAACA
AATGGGGGTGGATCCTCCCTCCTTAAAAAACATTCTCCACTTGCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_h22.b1 MSMg01no416_h22.b1 CHROMAT_FILE:
MSMg01no416_h22.b1 PHD_FILE: MSMg01no416_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:08 2005
         (485 letters)



>mm_chr1_135135506_135136390
          Length = 885

 Score =  855 bits (442), Expect = 0.0
 Identities = 469/478 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctgtaggcatatcctggaggagctaggatcaggagtgggcctgttctagagccct 67
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 208 gaattctgtaggcagaaactggaggagctaggatcaggagtgggcctgttctagagcccc 267

                                                                       
Query: 68  aaacctcaagactaatgcaaattcaatgcagtgcaaacaaacgcaagagttagcttgtag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaacctcaagactaatgcaaattcaatgcagtgcaaacaaacgcaagagttagcttgtag 327

                                                                       
Query: 128 atggagcatatgaagggaatttcacgctgcataactgaaaccaggctggctcaacttcca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atggagcatatgaagggaatttcacgctgcataactgaaaccaggctggctcaacttcca 387

                                                                       
Query: 188 tcttgggccacctccagctctctagcttccttagcagagcagaggcagatcacctgatct 247
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tcctgggccacctccagctctctagcttccttagcagagcagaggcagatcacctgatct 447

                                                                       
Query: 248 ggctcctgtgtgggcatcagaggtgtccagggggtgaaggcaaatagatgattggctggt 307
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggctcctgtgtgggtatcagaggtgtccagggggtgaaggcaaatagatgattggctggt 507

                                                                       
Query: 308 gctttggcccaggatggtgccttgatttcctttttcttctgtgccaaatgtcaggttatc 367
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gctttgatccaggatggtgccttgatttcctttttcttctgtgccaaatgtcaggttatc 567

                                                                       
Query: 368 ctggggggaaagtagaaagatttgggggtcccaggttaatccttgttttaggaagcaaat 427
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 568 ctggggggaaagtagaaagatttgggggtcccaggttaatccttgtttcaggaagcaaat 627

                                                                     
Query: 428 gtccagccacaatcctttgtcctctggttgctctttctcccgttgcctctacagtgcg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtccagccacaatcctttgtcctctggttgctctttctcccgttgcctctacagtgcg 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_h22.g1 MSMg01no416_h22.g1 CHROMAT_FILE:
MSMg01no416_h22.g1 PHD_FILE: MSMg01no416_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:08 2005
         (454 letters)



>mm_chr1_135303362_135304215
          Length = 854

 Score =  661 bits (342), Expect = 0.0
 Identities = 345/346 (99%)
 Strand = Plus / Minus

                                                                       
Query: 109 ttccatggttcattcaagctgcagtgtgtcatttccttcctttctaaggccaagaatccg 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ttccatggttcattcaagctgcagtgtgtcatttccttcctttctaaggccaagaatccg 795

                                                                       
Query: 169 ttgtatctataaactgcgtattgttggtttgcttccgccttttggttgtcacagtgttgc 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ttgtatctataaactgcgtattgttggtttgcttccgccttttggttgtcacagtgttgc 735

                                                                       
Query: 229 tctagaggaagagctttctttcagttcttggggctgtatatacctgggagggattgctgg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tctagaggaagagctttctttcagttcttggggctgtatatacctgggagggattgctgg 675

                                                                       
Query: 289 atcagatgggaattctgtgtccatgtatttgttgtgcatttctgtaaccccagctctggg 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atcagatgggaattctgtgtccatgtatttgttgtgcatttctgtaaccccagctctggg 615

                                                                       
Query: 349 tggtctccccactgactacccgtgtgaaaacagccttcccaatgcctgctgcctgccagt 408
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tggtctccccactgtctacccgtgtgaaaacagccttcccaatgcctgctgcctgccagt 555

                                                         
Query: 409 ctatttcaagatgggggccagggcagtcccatgcccttcattggcc 454
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctatttcaagatgggggccagggcagtcccatgcccttcattggcc 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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