BAC Information

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BAC

Clone NameMSMg01-416I16
Chromosome1 (Build37)
Map Location 161,725,666 - 161,854,254
singlet/doubletdoublet
Overlap geneTnr
Upstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
Downstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416I16.T7 (MSMg01no416_i16.b1)MSMg01-416I16.TJ (MSMg01no416_i16.g1)
ACCAG512334AG512335
length715715
length of high quality
(start - end)		612 (36 - 647)469 (60 - 528)
definitionCHROMAT_FILE: MSMg01no416_i16.b1 PHD_FILE: MSMg01no416_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:11 2005CHROMAT_FILE: MSMg01no416_i16.g1 PHD_FILE: MSMg01no416_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,725,666 - 161,726,274)(161,853,786 - 161,854,254)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGCA
AAGTGCTATGTGTCTTCCTACCCATTGGTTCCCTGCTTAGTGGATTTCTA
CCCACCCTGTGGGAGTTCTGTTCAAAACACTGCTATGCTCTGGGGCTTTG
CTGACCCAACCACACCTCATTAGCTTCCTTTTGAGCTGGGTTCTCTGGGA
AACATGAGACCTCTCATTTTCCTTCAGATGTTTCTCTCCTATCAAGCCAG
TGGTCTCCTTAAGGACAGAGACTACATCTTATTTAACTCAAAGCCCCGAA
CTCCCCTCACTGAGACCCAGTTGCATTTATCCAGCCCAGCACTGTATGGT
CCCACACTCACTGGGCATTTCCAACCAGTAGCTGTGTAGGTCCATCAGAC
TCCATAAGCCCTCAGCTAAGTTCAGCATCTTCTTCCTCCAAAGATCCTCC
TCCAGAATTCTCTATTGCAACTCTGCAATTGAGGTGCATAATCTCTGAAT
TGAAAAACCACTGTGACTCCTTCCTCTGGCCCATATTCTACTTATTTTTC
TTTCTGAATCTCCATGGAGTCTCCACCCTCCTCTCCATCCTATCAGCAAC
ATGGTGTTCTGACTTCTACCAAGTCTCCCTAGACTATTCTACTACCACAG
NCTAGTCACTCAGCCACAGCCTCCCCAAGGCTGACTTCTATCTACATCCT
GCCAGTGTTATGGGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATGGCCTTTCCAATGGTACCAGTTGATCCCCTGAGTGTGAG
AAAGATGAACATGTCAGATCACCTTCCATGCTCAGCAGAGCACCCTGCTT
GCAAAGAATGACTGGATTGAGGGCTTCACTTATCAGTTTAGCTGTTTTCA
GTTAAGAAGGGGCTCAAGACAGAGTTCCCAGGATGATGGAGAGAGTTGAG
TCTCGTCCCAGCGTCCCCTTTACAGAGGCCTATGTCTTTATAAAAGGTAA
GTCGTGGGTTATTTCTTATTGCCAGTTTTGTGATTTGCCTTCAGGAGTTT
CTGGTACTAGGGGACTGTGGTGAATGTCAAAATTCCAGTTAGGTGAATAG
TGAAATTGTGGGCAGCTCATTCATGATGAGGAGACTTGGGTGGCTTCCAC
CTGGGGTCAGCAACCTCTGGGGGTTTGCCTGGGGGGTTGTGTTTCACCTG
CTTCCTTGTCCCTGAGCCCAGACTGGGGACNTGCAGTCTCCTGGGGAAAT
AGCTTAGATTACTAATGTTTCTGGTCTCCCCCCTTCTGTGCCCCATGCCC
TTGAGCCTATGATGAGTTGATGGACTCCCCCCAAAGCATCTTGGAATGGT
CTTTTCTCAATTCCATAAGTACTTCTTTTTATACGATGTAACTGTGTTTG
CCACTCTTTACCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_i16.b1 MSMg01no416_i16.b1 CHROMAT_FILE:
MSMg01no416_i16.b1 PHD_FILE: MSMg01no416_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:11 2005
         (612 letters)



>mm_chr1_161725463_161726474
          Length = 1012

 Score = 1108 bits (573), Expect = 0.0
 Identities = 600/609 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgcaaagtgctatgtgtcttcctacccattggttccctgcttagtggatttc 63
           ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 ggaattcctgcaaagtgttatgtgtcttcctacccatttgttccctgcttagtggatttc 263

                                                                       
Query: 64  tacccaccctgtgggagttctgttcaaaacactgctatgctctggggctttgctgaccca 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacccaccctgtgggagttatgttcaaaacactgctatgctctggggctttgctgaccca 323

                                                                       
Query: 124 accacacctcattagcttccttttgagctgggttctctgggaaacatgagacctctcatt 183
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 accacacatcattagcttccttttgagctgggttctctgggaaacatgagaccgctcatt 383

                                                                       
Query: 184 ttccttcagatgtttctctcctatcaagccagtggtctccttaaggacagagactacatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttccttcagatgtttctctcctatcaagccagtggtctccttaaggacagagactacatc 443

                                                                       
Query: 244 ttatttaactcaaagccccgaactcccctcactgagacccagttgcatttatccagccca 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 ttatttaactcaaagccccgaactcccctcacagagacccagttgcatttatccagccca 503

                                                                       
Query: 304 gcactgtatggtcccacactcactgggcatttccaaccagtagctgtgtaggtccatcag 363
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcactgtatggtcccacactccctgggcatttccaaccagtagctgtgtaggtccatcag 563

                                                                       
Query: 364 actccataagccctcagctaagttcagcatcttcttcctccaaagatcctcctccagaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actccataagccctcagctaagttcagcatcttcttcctccaaagatcctcctccagaat 623

                                                                       
Query: 424 tctctattgcaactctgcaattgaggtgcataatctctgaattgaaaaaccactgtgact 483
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 624 tctctattgcaactctgcaattgaggtgcataacctctgaattgaaaaaccactgtgact 683

                                                                       
Query: 484 ccttcctctggcccatattctacttatttttctttctgaatctccatggagtctccaccc 543
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 684 ccttcctctggcccatattctactcatttttctttctgaatctccatggagtctccaccc 743

                                                                       
Query: 544 tcctctccatcctatcagcaacatggtgttctgacttctaccaagtctccctagactatt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcctctccatcctatcagcaacatggtgttctgacttctaccaagtctccctagactatt 803

                    
Query: 604 ctactacca 612
           |||||||||
Sbjct: 804 ctactacca 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_i16.g1 MSMg01no416_i16.g1 CHROMAT_FILE:
MSMg01no416_i16.g1 PHD_FILE: MSMg01no416_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:11 2005
         (469 letters)



>mm_chr1_161853586_161854454
          Length = 869

 Score =  830 bits (429), Expect = 0.0
 Identities = 459/469 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcctttccaatggtaccagttgatcccctgagtgtgagaaagatgaacatgtcagat 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 669 atggcctttccaatggtaccagttgatcccctgagtgtgagaaatatgaacatgtcagat 610

                                                                       
Query: 61  caccttccatgctcagcagagcaccctgcttgcaaagaatgactggattgagggcttcac 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 609 caccttccatgctcagcagagcaccctgcttgaaaagaatgactggattgagggcttcac 550

                                                                       
Query: 121 ttatcagtttagctgttttcagttaagaaggggctcaagacagagttcccaggatgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttatcagtttagctgttttcagttaagaaggggctcaagacagagttcccaggatgatgg 490

                                                                       
Query: 181 agagagttgagtctcgtcccagcgtcccctttacagaggcctatgtctttataaaaggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agagagttgagtctcgtcccagcgtcccctttacagaggcctatgtctttataaaaggta 430

                                                                       
Query: 241 agtcgtgggttatttcttattgccagttttgtgatttgccttcaggagtttctggtacta 300
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agttgtgcgttatttcttattgccagttttgtgatttgccttcaggagtttctggtacta 370

                                                                       
Query: 301 ggggactgtggtgaatgtcaaaattccagttaggtgaatagtgaaattgtgggcagctca 360
           |||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||
Sbjct: 369 ggggactgtggtgaatgtcaaaatcccaactaggtgaatagtgaaattgtgggcagctca 310

                                                                       
Query: 361 ttcatgatgaggagacttgggtggcttccacctggggtcagcaacctctgggggtttgcc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 309 ttcatgatgaggagacttgggtggcttccacctggggtcagcaacctctgggggcttgcc 250

                                                            
Query: 421 tggggggttgtgtttcacctgcttccttgtccctgagcccagactgggg 469
           |||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 249 tgggggtttgtgtttcagctgcttccttgtccctgagcccagactgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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