BAC Information

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BAC

Clone NameMSMg01-416L02
Chromosome1 (Build37)
Map Location 188,797,361 - 188,970,121
singlet/doubletdoublet
Overlap geneSpata17
Upstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
Downstream geneGpatch2, Esrrg, 9330162B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416L02.T7 (MSMg01no416_l02.b1)MSMg01-416L02.TJ (MSMg01no416_l02.g1)
ACCAG512449AG512450
length715716
length of high quality
(start - end)		548 (61 - 608)498 (59 - 556)
definitionCHROMAT_FILE: MSMg01no416_l02.b1 PHD_FILE: MSMg01no416_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:23 2005CHROMAT_FILE: MSMg01no416_l02.g1 PHD_FILE: MSMg01no416_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,969,574 - 188,970,121)(188,797,361 - 188,797,857)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTATGC
AATATTCTCACTGTTTCCCTCTGCTACTTTTGGTGATGTGCTTTGAAAAA
CATGTCCTATCACCTGTATTTCTCTCTCAAGTTACTTTCTCAAGAATCTT
TTGTGATGCACACATCCTGTCAGGTGGCCTCTCATAGGGCTTTGCTCACA
TGGTGGCATGTGTGTTAGGATCACTACTGGATCACCACTGAGTTTCTTTA
TGACATCACACTTGTGAACAAAATGGGCCCTTCTTAATCTCCTCCCCAAT
CCCACAGTCTATATTCCTAGGGCCCTCCAGGAGTTCTGATTGGCTAGTCT
ACATAATTTGTTTGTAGTAGCTTCCACAGCCATCACACAGGGTAAGAGAG
TCCTGGTTCCACTGTAAGATACAGAAGAGCCCTTGAAGCACAACACTTGT
TTCCCAAGGACTGGGTGTGCTGTTGACTGCTGAGTAGATTCCCAAGGTCT
ATGGTAGTGGCTGTGTAGGATACCCACAGTAGGTACTAGAGAAGCACACC
TTAGTGGATGAACTCTACCATCCTGGGCTTTGGAGTTTGACCTGCTTGTG
CCCCTTCTAACAAAATGCCAGATACTAGATAAATACACCAGTTTCTTGGT
TGCTTGGTTGGTTGGGTTTCTCACAAGTCTGTAAACTACGAAGCAAAGTG
CAGCAGATCCTGTAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCATGCAAGCCGTTCACTTACAAATCAACCCATAGAAACCACC
ATTTACTATGTGCAGTTGCTAAGGACAGCAAAAAGAGAACATGACTTTAA
GCACTTAAAGATAGGAAGGCAAAGCTTTGGTCACTAGAACTGTTTTAGCT
GGCTCCTATGTCCCTTTGTTTATATCTACATCCTGTTGCTTCCTGGGACT
CAGATGAGTGCCTCTTCATTTTCTGCTGTGTGTTATTTCAACTTCAATTG
TATTTTGTAGGCTTTTGGTTGCAGTGACAGATAACCAAGAGAAAGCATTT
ATAAAGAGGAAAAGTTGATTTTGGCTCATAGCTTGACTTTACTCTGATCA
CTTGAGAGTTTTGCTTTGGGTCTGTGGCAGTATACTACATTATGTCAGGA
GCCTGTGAGGGAGGGGGAGGCCTGTTCACCTCAAGATGGCTAAGAAGTAA
AGAGAGGAAGGGGGCTGTGTTCCCAATATCCCCTCTGTTCTAGTTTTGTT
TCTATGGCTGTGACAAAGTAGCCAAAGCAACTGAGTAAAGAAAGGGTTCT
TTCAGTTTACATCATGGTAGGGAAGTGAAGGCAGGACTTTGGCCAGTCCC
ATCACATCCACAGTCCACCACACCACATCCACAGTCAGCCACATAAAATC
CAGTCAGCTACATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_l02.b1 MSMg01no416_l02.b1 CHROMAT_FILE:
MSMg01no416_l02.b1 PHD_FILE: MSMg01no416_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:23 2005
         (548 letters)



>mm_chr1_188969374_188970321
          Length = 948

 Score = 1036 bits (536), Expect = 0.0
 Identities = 545/548 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtttccctctgctacttttggtgatgtgctttgaaaaacatgtcctatcacctgtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ctgtttccctctgctacttttggtgatgtgctttgaaaaacatgtcctatcacctgtatt 689

                                                                       
Query: 61  tctctctcaagttactttctcaagaatcttttgtgatgcacacatcctgtcaggtggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tctctctcaagttactttctcaagaatcttttgtgatgcacacatcctgtcaggtggcct 629

                                                                       
Query: 121 ctcatagggctttgctcacatggtggcatgtgtgttaggatcactactggatcaccactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctcatagggctttgctcacatggtggcatgtgtgttaggatcactactggatcaccactg 569

                                                                       
Query: 181 agtttctttatgacatcacacttgtgaacaaaatgggcccttcttaatctcctccccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agtttctttatgacatcacacttgtgaacaaaatgggcccttcttaatctcctccccaat 509

                                                                       
Query: 241 cccacagtctatattcctagggccctccaggagttctgattggctagtctacataatttg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cccacagtctacattcctagggccctccaggagttctgattggctagtctacataatttg 449

                                                                       
Query: 301 tttgtagtagcttccacagccatcacacagggtaagagagtcctggttccactgtaagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttgtagtagcttccacagccatcacacagggtaagagagtcctggttccactgtaagat 389

                                                                       
Query: 361 acagaagagcccttgaagcacaacacttgtttcccaaggactgggtgtgctgttgactgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acagaagagcccttgaagcacaacacttgtttcccaaggactgggtgtgctgttgactgc 329

                                                                       
Query: 421 tgagtagattcccaaggtctatggtagtggctgtgtaggatacccacagtaggtactaga 480
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 328 tgagtagattcccaaggtctatggcagtgactgtgtaggatacccacagtaggtactaga 269

                                                                       
Query: 481 gaagcacaccttagtggatgaactctaccatcctgggctttggagtttgacctgcttgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaagcacaccttagtggatgaactctaccatcctgggctttggagtttgacctgcttgtg 209

                   
Query: 541 ccccttct 548
           ||||||||
Sbjct: 208 ccccttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_l02.g1 MSMg01no416_l02.g1 CHROMAT_FILE:
MSMg01no416_l02.g1 PHD_FILE: MSMg01no416_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:23 2005
         (498 letters)



>mm_chr1_188797161_188798058
          Length = 898

 Score =  946 bits (489), Expect = 0.0
 Identities = 495/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcaagccgttcacttacaaatcaacccatagaaaccaccatttactatgtgcagttg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 catgcaagccgttcacttacaaatcaacccatagaaaccgccatttactatgtgcagttg 260

                                                                       
Query: 61  ctaaggacagcaaaaagagaacatgactttaagcacttaaagataggaaggcaaagcttt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaggacagcaaaaagagaacataactttaagcacttaaagataggaaggcaaagcttt 320

                                                                       
Query: 121 ggtcactagaactgttttagctggctcctatgtccctttgtttatatctacatcctgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcactagaactgttttagctggctcctatgtccctttgtttatatctacatcctgttg 380

                                                                       
Query: 181 cttcctgggactcagatgagtgcctcttcattttctgctgtgtgttatttcaacttcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcctgggactcagatgagtgcctcttcattttctgctgtgtgttatttcaacttcaat 440

                                                                       
Query: 241 tgtattttgtaggcttttggttgcagtgacagataaccaagagaaagcatttataaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtattttgtaggcttttggttgcagtgacagataaccaagagaaagcatttataaagag 500

                                                                       
Query: 301 gaaaagttgattttggctcatagcttgactttactctgatcacttgagagttttgctttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaagttgattttggctcatagcttgactttactctgatcacttgagagttttgctttg 560

                                                                       
Query: 361 ggtctgtggcagtatactacattatgtcaggagcctgtgagggagggggaggcctgttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtctgtggcagtatactacattatgtcaggagcctgtgagggagggggaggcctgttca 620

                                                                       
Query: 421 cctcaagatggctaagaagtaaagagaggaagggggctgtgttcccaatatcccctctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcaagatggctaagaagtaaagagaggaagggggctgtgttcccaatatcccctctgt 680

                            
Query: 481 tctagttttgtttctat 497
           |||||||||||||||||
Sbjct: 681 tctagttttgtttctat 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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