Query= MSMg01no416_l11.b1 MSMg01no416_l11.b1 CHROMAT_FILE:
MSMg01no416_l11.b1 PHD_FILE: MSMg01no416_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:24 2005
(635 letters)
>mm_chr1_27533995_27535028
Length = 1034
Score = 1176 bits (608), Expect = 0.0
Identities = 625/631 (99%), Gaps = 1/631 (0%)
Strand = Plus / Plus
Query: 5 gaattcacattgtgtatcgaggaaatacaatctgctgtgaaaaacagtaagtataactgc 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacattgtgaat-gaggaaatacaatctgctgtgaaaaacagtaagtataactgc 263
Query: 65 tgtagaaaatctttgtgatgaagtataaaataatgtgggaaatttccatggttttgcaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtagaaaatctttgtgatgaagtataaaataatgtgggaaatttccatggttttgcaac 323
Query: 125 acaaagattttaactgaacgaataaagatagaacagaaaggcacatgatgtagagattac 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 acaaagattttaactgaacgaatagagatagaacagaaaggcacatgatgtagagattac 383
Query: 185 taggtccttagctttccatgaccctgaacttcctgtaaaccacaggcttcaggataaatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taggtccttagctttccatgaccctgaacttcctgtaaaccacaggcttcaggataaatt 443
Query: 245 attttgtagtctctatttaatgaaggtgaaaagttatcccaaaatttttatggtacaata 304
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 attttgtagtctctatttaatgaaggtgaaaagttatcccaaattttttatggtacaata 503
Query: 305 tctaagtagaagctatttttttgtggacaataaggccactctttaatattaattttattc 364
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctaagtagaagctatttttatgtggacaataaggccactctttaatattaattttattc 563
Query: 365 tctaatatatatcatctttactaattagctatcattaacaggatatttcatatttgtctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctaatatatatcatctttactaattagctatcattaacaggatatttcatatttgtctg 623
Query: 425 aagagaaataggttcaagggcagagagttgcttatttatctctgcttcctggtagctcac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagagaaataggttcaagggcagagagttgcttatttatctctgcttcctggtagctcac 683
Query: 485 tcattctctgacattcaagagtgattagtatattanagtggaatgaaaccttttgtggta 544
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 684 tcattctctgacattcaagagtgattagtatattaaagtggaatgaaaccttttgtggta 743
Query: 545 tgtctttcacaaggcattaataatatcactctctacattaatagaattatgtgctgatat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgtctttcacaaggcattaataatatcactctctacattaatagaattatgtgctgatat 803
Query: 605 gattgatattagagatcacagatcacttttc 635
|||||||||||||||||||||||||||||||
Sbjct: 804 gattgatattagagatcacagatcacttttc 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1034
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1024
Effective search space: 640000
Effective search space used: 640000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_l11.g1 MSMg01no416_l11.g1 CHROMAT_FILE:
MSMg01no416_l11.g1 PHD_FILE: MSMg01no416_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:24 2005
(597 letters)
>mm_chr1_27699581_27700577
Length = 997
Score = 1058 bits (547), Expect = 0.0
Identities = 575/597 (96%), Gaps = 20/597 (3%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacacagaaaccctgtctcaaaatgacctaaataaataaataa 60
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 caggacagccagggctacacacagaaaccctgtctcaaaatgacc--------------- 598
Query: 61 ataaataaataaataaataaataaataaataaataaataaataagtggaattggaccttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 -----taaataaataaataaataaataaataaataaataaataagtggaattggaccttt 543
Query: 121 aacaagaatgtctacattatgaacacaaacatacatattcacatagagggaaggacagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aacaagaatgtctacattatgaacacaaacatacatattcacatagagggaaggacagag 483
Query: 181 ggaacaagggagagtaaaatggggagagcatggcgtgaacacagaaagttataatattga 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggaacaagggagagtaaaatggtgagagcatggcgtgaacacagaaagttataatattga 423
Query: 241 tactccagaatttattttctatgcaaatgaattgtattttctctgtaataaaggaagatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tactccagaatttattttctatgcaaatgaattgtattttctctgtaataaaggaagatg 363
Query: 301 gaatttgctacactggtaatgaacttagtaatttttatggaataccaaacactcaacgtt 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 362 gaatttgctacactggtaatgaacttagtaatttttatggtataccaaacactcaacgtt 303
Query: 361 atttattattaaatatttttattcaatgtgaagtttgaaataaattgtaaaatgatataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atttattattaaatatttttattcaatgtgaagtttgaaataaattgtaaaatgatataa 243
Query: 421 aataataatctagattcaatactgtaaatgagtttgtcctacagagcacaatgttatgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aataataatctagattcaatactgtaaatgagtttgtcctacagagcacaatgttatgca 183
Query: 481 ctacttatactacaattaaaatgaaacagtgctatacaacatgaaggaagtagtttcact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctacttatactacaattaaaatgaaacagtgctatacaacatgaaggaagtagtttcact 123
Query: 541 accattgggattggtgtgtagtcatgattttaaattgttttgccaatttttacctgg 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 accattgggattggtgtgtagtcatgattttaaattgttttgccaatttttacctgg 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
