Query= MSMg01no416_n11.b1 MSMg01no416_n11.b1 CHROMAT_FILE:
MSMg01no416_n11.b1 PHD_FILE: MSMg01no416_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:33 2005
(516 letters)
>mm_chr1_16405079_16405994
Length = 916
Score = 969 bits (501), Expect = 0.0
Identities = 513/517 (99%), Gaps = 2/517 (0%)
Strand = Plus / Minus
Query: 1 gctctctctgtgggcaagctctcctgttgcagggaaggtgcccagagttctggctctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctctctctgtgggcaagctctcctgttgcagggaaggtgcccagagttctggctctcag 501
Query: 61 cactgcctcctgggtgaggaagaaggcctgaaggaactctgcccaagaaactctgttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cactgcctcctgggtgaggaagaaggcctgaaggaactctgcccaagaaactctgttgct 441
Query: 121 tctgtggcccttgagctctcttgttggggctggtctctgagagaccctggcatgccagat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 tctgtggcccttgagctctcttgttggggctggtctctgagagaccctggcatgacagat 381
Query: 181 ggtgttctcacctgagacctgggatcagaaccctctttggaggcagattctcttcagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtgttctcacctgagacctgggatcagaaccctctttggaggcagattctcttcagaga 321
Query: 241 tctttagatccta-tgtagcctgctgggtgatgagtcctctggggaccttgggaccatct 299
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctttagatcctagggt-gcctgctgggtgatgagtcctctggggaccttgggaccatct 262
Query: 300 gatgatttcgcgcccaaggtggtgcgggagcccaaaatggtgggtggctggcgctgactg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgatttcgcgcccaaggtggtgcgggagcccaaaatggtgggtggctggcgctgactg 202
Query: 360 gaatgaactcaagccactggttgggtaggtttcctgtgtccctgttcctgcttgcacaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatgaactcaagccactggttgggtaggtttcctgtgtccctgttcctgcttgcacaag 142
Query: 420 ccactcccagctattttggaacagatcttttgttctactcaccagtgatctcaaaatctt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ccactcccagctattttggaacagatcttttgttctactcaccagtgatctcaaaatctt 82
Query: 480 gggtgtgctaggacgcttgcagcgtggaaagtcctca 516
|||||||||||||||||||||||||||||||||||||
Sbjct: 81 gggtgtgctaggacgcttgcagcgtggaaagtcctca 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_n11.g1 MSMg01no416_n11.g1 CHROMAT_FILE:
MSMg01no416_n11.g1 PHD_FILE: MSMg01no416_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:33 2005
(527 letters)
>mm_chr1_16209093_16210018
Length = 926
Score = 888 bits (459), Expect = 0.0
Identities = 510/527 (96%), Gaps = 1/527 (0%)
Strand = Plus / Plus
Query: 1 tggctttctgagtcccttcctagtctatgaagtagggtctggaatataaaacaactgatg 60
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tggctttctgagtccctacctagtctatgaagtagggtctggaatataaagcaactgatg 260
Query: 61 ctgcttgcccagagaagcaaacccctgagattttgagggtatgtggaacaggctgagcca 120
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccttgcccagagaagcaaacctctgagattttgagggtatgtggaacaggctgagcca 320
Query: 121 ggctcacagggccagggaggctatggaaacttaaagctgaggaggtggatcagtgggtca 180
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct: 321 ggctcacagggccagggaggctatggaaacttaaagctgaggaggtgggttagtggg-cc 379
Query: 181 aagcattgggtgaaagcatgcaggcgagttctaatctctagacctatataaaagctaagt 240
|||||||||| ||||||||||||| |||| ||||||||||| ||||||||||||||||||
Sbjct: 380 aagcattgggagaaagcatgcaggtgagtgctaatctctagtcctatataaaagctaagt 439
Query: 241 gaggggatggagcaatgactctgccgtgaagaacacttgctttgcttttagaagaactgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaggggatggagcaatgactctgccgtgaagaacacttgctttgcttttagaagaactgg 499
Query: 301 gttcagttcccaggacacagctctcaattgcctgaaactgcagttacagaagatataacg 360
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 gttcagttcccagcacacagctctcaactgcctgaaactgcagttacagaagatataacg 559
Query: 361 ccatcttctggccttgtgggcacctgcacgcacacagacatatgtgaataaaaataatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccatcttctggccttgtgggcacctgcacgcacacagacatatgtgaataaaaataatat 619
Query: 421 atatctttttaaaaaacagccaaatgagtagtgccagcatctgtgatcccaggcaaaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 atatctttttaaaaaacagccaaatgagtagtgccagcatctgtgatcccaggcagaaac 679
Query: 481 agatataaaggcagaaacaggaaaatactctcaagttcttggcagag 527
||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 680 agatataaaggcagaaacaggaaaatactctgaagttcatggcagag 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space: 473572
Effective search space used: 473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
