MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-417D21
Chromosome	1 (Build37)
Map Location	120,318,689 - 120,319,106
singlet/doublet	singlet
Overlap gene	Clasp1
Upstream gene	B020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip
Downstream gene	Tcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb
Link	Open Mouse BAC browser

Click to get alignment info.

name	B020011L13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:547097 MGI:3588191
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs

name	LOC100041684 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041684
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC636972 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:636972
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	EG666785 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666785 MGI:3645457
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	EG634762 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:634762 MGI:3648947
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 3 Proteins pseudo : _no_value

name	LOC100042368 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042368
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 40 ESTs

name	LOC637083 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:637083
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Tsn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22099 MGI:109263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mki67ip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67949 MGI:1915199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Clasp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76707 MGI:1923957
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcfcp2l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:81879 MGI:2444691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041753 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041753
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Gli2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14633 MGI:95728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666838 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 Proteins pseudo : _no_value

name	LOC100041778 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041778
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Inhbb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16324 MGI:96571
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B020011L13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363901 GeneID:547097 MGI:3588191
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs product : RIKEN cDNA B020011L13 gene, transcript variant 1 transcript_id : XM_488281.4

name	LOC100042368 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234262 GeneID:100042368
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 40 ESTs product : similar to LOC434536 protein transcript_id : XM_001478568.1

name	Tsn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130098 GeneID:22099 MGI:109263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : translin transcript_id : NM_011650.3

name	Mki67ip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350753 GeneID:67949 MGI:1915199
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Mki67 (FHA domain) interacting nucleolar phosphoprotein transcript_id : NM_026472.3

name	Clasp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486878 GeneID:76707 MGI:1923957
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CLIP associating protein 1 transcript_id : NM_001081276.1

name	Tcfcp2l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053938 GeneID:81879 MGI:2444691
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor CP2-like 1 transcript_id : NM_023755.2

name	Gli2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487480 GeneID:14633 MGI:95728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GLI-Kruppel family member GLI2 transcript_id : NM_001081125.1

name	Inhbb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352162 GeneID:16324 MGI:96571
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inhibin beta-B transcript_id : NM_008381.2

name	B020011L13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82882344 GeneID:547097 MGI:3588191
definition	codon_start : 1 product : similar to mKIAA1611 protein isoform 1 protein_id : XP_488281.3

name	LOC100042368 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234263 GeneID:100042368
definition	codon_start : 1 product : similar to LOC434536 protein protein_id : XP_001478618.1

name	Tsn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755899 GeneID:22099 MGI:109263
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] [Evidence TAS]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IDA] codon_start : 1 note : testis/brain-RNA-binding protein product : translin protein_id : NP_035780.1

name	Mki67ip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754061 CCDS:CCDS15222.1 GeneID:67949 MGI:1915199
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005730 - nucleolus [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence ISS] [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation product : Mki67 (FHA domain) interacting nucleolar phosphoprotein protein_id : NP_080748.2

name	Clasp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486879 GeneID:76707 MGI:1923957
definition	GO_component : GO:0005881 - cytoplasmic microtubule [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008017 - microtubule binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007026 - negative regulation of microtubule depolymerization [Evidence IDA] codon_start : 1 note : CLIP-associating protein CLASP1; CLASP1alpha product : CLASP1 protein_id : NP_001074745.1

name	Tcfcp2l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053939 GeneID:81879 MGI:2444691
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0016565 - general transcriptional repressor activity [Evidence IDA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : Tcfcp2-related transcriptional repressor 1 product : transcription repressor CRTR-1 protein_id : NP_076244.2

name	Gli2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487481 GeneID:14633 MGI:95728
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003682 - chromatin binding [Evidence IDA]; GO:0003677 - DNA binding [Evidence IDA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030902 - hindbrain development [Evidence IMP] [Evidence IGI]; GO:0048666 - neuron development [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IGI] [Evidence IMP]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0001501 - skeletal development [Evidence IMP] codon_start : 1 note : Tax helper protein product : GLI-Kruppel family member GLI2 protein_id : NP_001074594.1

name	Inhbb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74315992 CCDS:CCDS15224.1 GeneID:16324 MGI:96571
definition	GO_component : GO:0005576 - extracellular region [Evidence ISS] [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence ISS]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005179 - hormone activity [Evidence IEA]; GO:0046789 - host cell surface receptor binding [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS]; GO:0042803 - protein homodimerization activity [Evidence ISS] GO_process : GO:0006952 - defense response [Evidence ISS]; GO:0040007 - growth [Evidence IEA]; GO:0046882 - negative regulation of follicle-stimulating hormone secretion [Evidence ISS]; GO:0048178 - negative regulation of hepatocyte growth factor biosynthesis [Evidence ISS]; GO:0001541 - ovarian follicle development [Evidence ISS]; GO:0046881 - positive regulation of follicle-stimulating hormone secretion [Evidence ISS]; GO:0009605 - response to external stimulus [Evidence ISS] codon_start : 1 note : activin product : inhibin beta-B protein_id : NP_032407.1

name	LOC100041684 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041684
definition	number : 1 pseudo : _no_value

name	LOC100041684 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041684
definition	number : 2 pseudo : _no_value

name	LOC100041684 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041684
definition	number : 3 pseudo : _no_value

name	LOC100041684 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041684
definition	number : 4 pseudo : _no_value

name	LOC100041684 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041684
definition	number : 5 pseudo : _no_value

name	LOC636972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636972
definition	number : 1 pseudo : _no_value

name	LOC636972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636972
definition	number : 2 pseudo : _no_value

name	LOC636972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636972
definition	number : 3 pseudo : _no_value

name	LOC636972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636972
definition	number : 4 pseudo : _no_value

name	LOC636972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636972
definition	number : 5 pseudo : _no_value

name	LOC636972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636972
definition	number : 6 pseudo : _no_value

name	EG666785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666785
definition	number : 1 pseudo : _no_value

name	EG666785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666785
definition	number : 2 pseudo : _no_value

name	EG666785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666785
definition	number : 3 pseudo : _no_value

name	EG666785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666785
definition	number : 4 pseudo : _no_value

name	LOC637083 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:637083
definition	number : 1 pseudo : _no_value

name	LOC637083 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:637083
definition	number : 2 pseudo : _no_value

name	LOC637083 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:637083
definition	number : 3 pseudo : _no_value

name	LOC100041753 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041753
definition	number : 1 pseudo : _no_value

name	LOC100041753 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041753
definition	number : 2 pseudo : _no_value

name	LOC666838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666838
definition	number : 1 pseudo : _no_value

name	LOC666838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666838
definition	number : 2 pseudo : _no_value

name	LOC100041778 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041778
definition	number : 3 pseudo : _no_value

name	LOC100041778 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041778
definition	number : 2 pseudo : _no_value

name	LOC100041778 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041778
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:158844
definition	standard_name : AU040286

name	(CDS detail)
type	STS
link
xref	UniSTS:234189
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:164124
definition	standard_name : AI852665

name	(CDS detail)
type	STS
link
xref	UniSTS:128664
definition	standard_name : D1Mit309

name	(CDS detail)
type	STS
link
xref	UniSTS:224570
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234193
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234190
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:223768
definition	standard_name : RH141775

name	(CDS detail)
type	STS
link
xref	UniSTS:186241
definition	standard_name : M-09981

name	(CDS detail)
type	STS
link
xref	UniSTS:161345
definition	standard_name : RH124523

name	(CDS detail)
type	STS
link
xref	UniSTS:234191
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234192
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:272529
definition	standard_name : PMC304100P4

name	(CDS detail)
type	STS
link
xref	UniSTS:225247
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:186242
definition	standard_name : 12_5_13_8.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:178455
definition	standard_name : AW546128

name	(CDS detail)
type	STS
link
xref	UniSTS:465479
definition	standard_name : Gli2

name	(CDS detail)
type	STS
link
xref	UniSTS:143218
definition	standard_name : Gli2

name	(CDS detail)
type	STS
link
xref	UniSTS:265489
definition	standard_name : Gli2

name	(CDS detail)
type	STS
link
xref	UniSTS:128726
definition	standard_name : D1Mit367

name	(CDS detail)
type	STS
link
xref	UniSTS:128727
definition	standard_name : D1Mit368

name	(CDS detail)
type	STS
link
xref	UniSTS:128528
definition	standard_name : D1Mit189

name	(CDS detail)
type	STS
link
xref	UniSTS:128583
definition	standard_name : D1Mit240

name	(CDS detail)
type	STS
link
xref	UniSTS:128812
definition	standard_name : D1Mit443

name	(CDS detail)
type	STS
link
xref	UniSTS:128902
definition	standard_name : D1Mit535

name	(CDS detail)
type	STS
link
xref	UniSTS:271900
definition	standard_name : PMC203309P3

name	(CDS detail)
type	STS
link
xref	UniSTS:496692
definition	standard_name : Inhbb

name	(CDS detail)
type	STS
link
xref	UniSTS:120868
definition	standard_name : d13mgh16

name	(CDS detail)
type	STS
link
xref	UniSTS:271333
definition	standard_name : PMC155220P1

name	EG634762 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149234232 GeneID:634762 MGI:3648947
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 3 Proteins product : predicted gene, EG634762 pseudo : _no_value transcript_id : XR_032950.1

clone name	MSMg01-202P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346J11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-070B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479H05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-421B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116I10
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-417D21.T7 (MSMg01no417_d21.b1)	MSMg01-417D21.TJ (MSMg01no417_d21.g1)
ACC	AG512869	AG512870
length	851	780
length of high quality (start - end)	---	470 (73 - 542)
definition	CHROMAT_FILE: MSMg01no417_d21.b1 PHD_FILE: MSMg01no417_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:04 2005	CHROMAT_FILE: MSMg01no417_d21.g1 PHD_FILE: MSMg01no417_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:04 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAACACCGCGGAA ATTCAAGATCACCCCCAACAACATGGCAAGTTTGAGGTCAGCCTGAGAAA TTTCTCTTACAAAATGTCTGATACTCACTCTGTGAGTGTGTCTGTGTCTC TCGTCGTCGTCTCCGTCACAGACATCAACCCCAACATCACCAAACCAAAC ACCAAACAATCCACCAACAATACCCCCAACATACACCACAAAACAACAAC CCCAAACACCACCCCCCCAACACCCCCCCCCACCCCACACCCCCACACCC CCCCCCCCCACAACCCAACCAACAACCCCTTCTTTCTCCCACCCACCACC AAATCCATACCCCACCCCCATAACTACCCAACCCCCCCCACCACACCCCC CAACCCCACCCACCACTAACATCAAAACACCAACCCACCCCACAACCACC ACACCCCCACCCAATAACAACCCAACTCCACCCCACCCACCACACCAACA CCACATACCCCAAACAACACAACCCCCCATTACCACAATCCACCAACCAC CACCCAACCCACAACACACACCACACCCCCCCACACCAACCTCCACTACC CCACCCCCCCAACCCACAACCCACACTACCCCCCACCCACCCCCACACCA CCCAACAAAAAATATAAAAACCCCCCATCCAAACCCACCCATACCCACAC CAACACATCACAAAAACCCAAAAATACCCCCCCACCACCCCCCCCCAACA ACCCACATCCACAACCCCACCCACCCAACCCAACACTCAACCAACCAACA CCACCCCACAAATAAACACCCACCCACCCCACCCATTCCCCCACCACACC G	ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXTCCAGATTCTGCAGGCAGTAGTGCTGCT TATGTGTGCCTTGCTCAGAATCCCATGTAGTTCATGCAGCCACATGCTGT ACCTGAGTAGGGAAGCAATCACAAGTTCTAACCAGCACCCCCACTAGACA GGAGCCACCACTAAGGAGCTTAGTATGCAGCAGGCAAGAAATAACTGAGA CCCACTCTCTCATTCAGTGCTCATAAAAACTTTATTATCTGACTGGGGAG ACGGCTTAGGGGATAAAGCACTTGCCACACATGCACAAGGACCTGAGCTC AGCTTCCCAGAACCACATAAAAGCTAGACATGGAGGTGCATTTATAATCT ATGGGAAGATGAGAGGTGGAATCAGAAGGCTCTCACCCAGAAGTGTATAC GTCAGCTAACCTGCTATATGCAACAGTAGTGAGCAAGAAGTGACCCTGTC TTATACCAAGGGAAAGGAAGGTAAGGACTAACACCTGATGCTGGTCTCCA ACCTGCACACACACCATGGCATATGCACACTCCCATACACACAAACATGC CCACTCTCTCTTCTATACACCCCCTCTCCCTCCTCTTCTTCCCCCTTTTC TTTCTTATATCTTTTTTATATGTTTAAATCAACTCTTACACCTTATATTT TTCGACTGTGTTTTTTTCCTCAACCCCCCTTTTGGTTTCCCCCATTCTTT CGTTGTTTCTTATACCTCTTTCTTTTCCCG
quality values	Open. Hide. 11 17 11 11 8 9 9 12 12 13 13 15 20 12 12 11 12 9 9 9 9 9 9 13 8 8 11 8 19 23 10 7 7 7 6 6 6 7 7 8 8 8 17 8 17 22 17 12 10 10 8 8 15 11 17 9 21 9 9 10 9 9 9 9 7 6 6 6 6 8 10 19 10 9 9 11 18 25 34 47 30 30 15 15 11 25 25 40 41 41 23 23 12 9 9 9 27 21 21 12 19 22 25 20 17 17 17 23 23 26 30 30 21 18 11 9 9 8 8 8 8 8 8 8 10 11 9 9 9 9 9 8 8 8 8 8 8 11 15 13 10 10 10 10 11 13 10 10 10 9 9 9 8 13 10 10 10 10 8 10 10 10 10 8 8 8 9 9 9 9 9 11 9 9 9 9 17 12 10 10 9 11 11 15 11 9 9 9 8 8 12 10 10 8 8 8 8 8 8 15 15 14 9 9 9 9 9 9 9 9 11 12 13 10 13 10 10 10 11 9 9 9 9 16 18 16 12 11 10 10 9 13 8 8 8 10 8 8 10 9 9 9 9 12 11 11 11 11 10 12 9 13 10 9 8 8 8 8 8 8 6 8 11 13 10 8 10 10 11 11 8 8 8 11 18 16 16 27 22 12 12 16 11 10 10 9 10 10 9 9 9 9 11 6 7 7 7 8 8 18 17 10 11 6 8 8 8 6 7 7 10 8 12 12 11 9 9 8 8 8 8 8 6 8 8 8 9 12 12 10 10 10 11 9 9 9 9 9 15 15 9 6 8 8 8 8 8 10 12 12 10 10 7 7 9 9 10 10 9 9 16 8 8 9 8 8 8 9 9 9 9 8 8 8 8 10 8 16 13 12 8 8 8 8 11 8 8 8 19 10 12 6 6 6 8 8 8 8 8 9 8 8 8 8 8 8 6 6 8 8 8 9 6 11 7 6 6 6 8 8 8 13 13 13 12 11 11 10 8 8 6 6 6 8 6 6 6 6 13 15 10 10 9 9 11 11 6 6 8 8 11 8 8 8 8 10 8 6 6 6 10 8 8 10 8 8 6 6 6 7 6 11 7 6 8 6 8 8 8 10 10 16 8 8 6 6 10 8 8 10 8 8 8 8 6 8 8 6 6 6 6 8 8 8 8 8 8 10 17 15 12 12 11 11 11 18 15 8 8 8 10 10 10 15 14 24 21 10 6 6 6 6 8 8 6 7 7 6 8 9 10 8 8 8 9 8 8 8 8 8 8 8 8 9 8 10 10 12 19 8 8 6 6 8 8 8 8 10 8 8 6 10 7 6 6 6 8 9 18 12 14 11 10 10 8 8 8 8 8 8 6 6 10 7 7 6 6 6 7 8 8 6 6 8 8 8 8 9 11 8 8 10 10 12 10 10 9 9 9 9 12 8 8 8 8 8 8 9 13 17 19 12 14 8 8 8 10 10 9 9 10 11 11 8 10 8 8 8 10 15 13 12 9 8 8 7 8 10 13 18 18 11 11 11 11 11 13 13 15 11 11 11 22 16 8 8 6 6 8 6 6 8 10 10 10 8 8 8 8 9 9 15 9 10 13 6 6 8 19 8 9 9 12 16 17 15 8 8 8 10 8 6 8 10 8 8 7 8 13 18 15 11 11 9 10 9 11 11 14 15 18 19 13 10 8 8 7 7 11 8 8 8 8 15 24 14 12 12 15 15 10 8 10 8 7 7 6 6 8 8 10 11 16 23 23 13 11 11 12 9 9 13 16 10 13 9 10 10 10 10 10 13 15 13 10 9 8 8 8 8 8 8 8 10 8 8 8 8 8 10 13 8 9 9 12 13 9 9 12 8 14 9 11 11 11 11 7 6 8 11 6 6 6 7 6 11 12 11 10 8 8 6 10 8 8 8 6 9 15 12 17 16 15 12 12 11 12 8 8 6 6	Open. Hide. 10 13 10 9 9 8 7 7 6 6 8 13 16 37 32 37 37 37 37 37 39 37 37 44 37 39 25 25 12 9 9 8 9 8 6 6 8 10 18 19 37 32 29 29 32 32 30 30 33 33 33 37 37 37 37 37 27 21 10 15 10 11 11 10 12 15 10 22 26 31 31 36 36 35 30 32 32 35 48 53 53 47 47 47 47 53 53 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 48 48 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 57 57 54 54 54 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 59 59 68 68 68 68 68 59 59 59 57 57 57 57 57 57 57 57 59 57 59 59 59 62 68 68 68 68 68 62 68 68 68 68 62 62 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 68 68 68 68 68 68 68 59 59 59 59 59 68 68 68 68 68 57 57 57 57 57 59 59 59 57 57 59 57 57 68 68 68 68 59 59 57 57 44 44 43 29 29 29 35 33 44 44 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 52 48 48 59 59 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 57 57 57 59 68 68 68 68 68 59 59 57 57 57 59 59 59 57 59 57 59 59 59 57 57 57 54 54 54 54 48 59 48 48 48 57 57 59 57 48 43 43 43 43 47 43 43 43 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 50 46 43 39 39 38 34 34 39 39 41 39 40 40 40 37 39 39 48 48 43 43 43 43 43 43 43 46 46 43 47 36 36 35 31 31 34 34 28 28 30 37 37 47 46 41 39 19 15 7 7 7 11 16 41 39 30 23 20 18 22 31 39 28 22 13 16 12 15 15 22 28 27 28 28 28 31 29 31 31 25 28 35 36 28 28 22 12 9 10 10 10 11 10 9 9 9 12 10 15 23 14 15 15 26 23 20 18 12 14 9 9 9 14 13 11 9 9 12 18 21 19 19 13 11 11 16 24 19 15 8 8 8 8 8 8 8 8 8 8 12 8 8 10 11 10 8 8 8 8 10 10 16 17 16 24 8 8 6 6 8 8 9 9 9 9 11 13 8 9 10 10 13 15 15 14 14 12 14 12 16 13 10 8 8 8 10 10 8 8 9 9 9 10 10 11 6 6 6 8 8 10 13 15 11 10 8 8 8 9 11 23 17 8 8 8 8 8 8 8 8 11 10 10 10 10 10 10 10 10 10 11 15 18 11 11 10 11 11 10 8 10 10 8 8 8 10 6 8 6 6 8 8 8 10 9 8 8 16 13 10 10 13 10 8 8 8 8 8 8 8 9 12 9 9 9 9 15 13 7 6 8 8 11 11 11 10 10 9 9 10 10 10 9 9 6 8 6 6 8 8 10 10 12 10 10 11 10 10 6 6 8 8 10 10 10 14 10 10 13 13 12 12 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no417_d21.g1 MSMg01no417_d21.g1 CHROMAT_FILE:
MSMg01no417_d21.g1 PHD_FILE: MSMg01no417_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:04 2005
         (470 letters)



>mm_chr1_120318689_120319558
          Length = 870

 Score =  793 bits (410), Expect = 0.0
 Identities = 416/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagattctgcaggcagtagtgctgcttatgtgtgccttgctcagaatcccatgtagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tccagattctgcaggcagtagtgctgcttatgtgtgccttgctcagaatcccatgtagtt 359

                                                                       
Query: 61  catgcagccacatgctgtacctgagtagggaagcaatcacaagttctaaccagcaccccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 catgcagccacatgctgtacctgagtagggaagcaatcacaagttctaaccagcaccccc 299

                                                                       
Query: 121 actagacaggagccaccactaaggagcttagtatgcagcaggcaagaaataactgagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 actagacaggagccaccactaaggagcttagtatgcagcaggcaagaaataactgagacc 239

                                                                       
Query: 181 cactctctcattcagtgctcataaaaactttattatctgactggggagacggcttagggg 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cactctctcattcagggctcataaaaactttattatctgactggggagacggcttagggg 179

                                                                       
Query: 241 ataaagcacttgccacacatgcacaaggacctgagctcagcttcccagaaccacataaaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ataaagcgcttgccacacatgcacaaggacctgagctcagcttcccagaaccacataaaa 119

                                                                       
Query: 301 gctagacatggaggtgcatttataatctatgggaagatgagaggtggaatcagaaggctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gctagacatggaggtgcatttataatctatgggaagatgagaggtggaatcagaaggctc 59

                                                                     
Query: 361 tcacccagaagtgtatacgtcagctaacctgctatatgcaacagtagtgagcaagaag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  tcacccagaagtgtatacgtcagctaacctgctatatgcaacagtagtgagcaagaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information