BAC Information

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BAC

Clone NameMSMg01-417F16
Chromosome1 (Build37)
Map Location 66,109,307 - 66,293,830
singlet/doubletdoublet
Overlap geneEG667786, Mtap2
Upstream geneCrygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781
Downstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417F16.T7 (MSMg01no417_f16.b1)MSMg01-417F16.TJ (MSMg01no417_f16.g1)
ACCAG512955AG512956
length769775
length of high quality
(start - end)		515 (47 - 561)446 (74 - 519)
definitionCHROMAT_FILE: MSMg01no417_f16.b1 PHD_FILE: MSMg01no417_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:12 2005CHROMAT_FILE: MSMg01no417_f16.g1 PHD_FILE: MSMg01no417_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(66,293,320 - 66,293,830)(66,109,307 - 66,109,752)
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTTCTATGCGATCTGGCATCTGCCTTCAGGCAGCATAATGTAT
CTGCATATTAAAAGTCACCATTTTTCTGTCCTGTTTCTCCTCTCCCAAAA
GGTAAAAGAAATGTCAGAAATTAATCTTAAAGAGTTAGTTTATAGAGCGT
ATTCCCGTTTTAACAATGAGAAAGACTTTCTTGCCCACATTCAATCATAT
GGGGATAGCCAGTTCATACCTTACATATATATCAAGCAGATGAGAGCCTG
TTTAAACCTCATAAGGAATAAAACCTGGCAACAGCAGAGACAGCTACCAA
GTAAGTAGTAGCAAAGTCAGCTGCCTGCTGAAAGTCACTTTTTCTACCTT
TGCTGTTTTCCCTGTTTCTCCCTCAGAAAAATTACACTAGAAATAAAATT
TGGGGTATTGAAACCACAGATCATTAAAAAAAATTATTTTTAAATTGGAG
CGCATTTATTTATTTGTAATATGTGTCTTTATTTTTTATGACTTATTTTA
TTTTTAATTTTGTGTTTGTGGNAGGTATGTGCACATGAGTGCAGAGGCCC
ACAGAGGTCAGAGGTGTCTGAGTCCCAGAACCACTGCTACAGGCAGGTGT
AAGCCGCGTGGTGCGGGTTCTTGGGAGCTGAATTCCTCCACAAGATAATA
CATGTTTCCTACCACTGAGGAACTCCTCCAACCTTCTTGGATTGTACAGG
GGTCTTTCTTAACCAACCC

NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAGCACTAACAAGAGTCTGGGTTGGA
CTGGCTGCTGGGGAGTTTGTGACATACTAGGTGACACCCCTGGAGTCACT
TCGCTTCAACTCCAGCTTGGAAGTGCCTGCCTGGCTCAGGGTCTGCACTG
CAGCCTACTCCTTGCTCCAGGGCCTGACTGCAGGGCCAGAGCCTATCCCA
TAGAGGCACGACAGCAGCCACTCAAACCAACCACACCTCCCAGGCAAACT
GAACCATGAACACCGAAACGTATCAGACCCCCATGGAGGTGGTGGTCTAT
CAGCTGCACACTTTCTCCATCTCCTTCTTCTCTTCTCTGCTTGAAGGGGA
TGTGGTTTCCGATAAACTGGATAACAGTGCCTCCGGAGCCAGTGTGGTGG
CCCTAGACAACAAGATTGAGCAGGCCATGGATCTAGTGAGGAATCTTCTG
ATGTGAGAGAGGAGGTGGAGGTCATAAAGGAGCACACTTGTGAACTGGCT
GAGAAGAACTCCCAGCTGGAACTCGAAAATACCCTTCTTGAATCCTTTGG
CATGTCTATAATAACTGTATAAACTCCCGCTCCCTTTCGAACCCTTTAAT
AATCTTTCCCCCCCCCCCCCTTAACCCCCTGAAACCTCGTTAACTTCCGA
CATTCCCCCGTGGTTTTGTCTCCGCTTACTCTTTCTTCCTCCCCCGCTTT
TTCTATCTCCCCCCCTTGTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_f16.b1 MSMg01no417_f16.b1 CHROMAT_FILE:
MSMg01no417_f16.b1 PHD_FILE: MSMg01no417_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:12 2005
         (515 letters)



>mm_chr1_66293205_66294119
          Length = 915

 Score =  973 bits (503), Expect = 0.0
 Identities = 509/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttctatgcgatctggcatctgccttcaggcagcataatgtatctgcatatta 64
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaattcttttcaatgggatctggcatctgccttcaggcagcataatgtatctgcatatta 567

                                                                       
Query: 65  aaagtcaccatttttctgtcctgtttctcctctcccaaaaggtaaaagaaatgtcagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaagtcaccatttttctgtcctgtttctcctctcccaaaaggtaaaagaaatgtcagaaa 507

                                                                       
Query: 125 ttaatcttaaagagttagtttatagagcgtattcccgttttaacaatgagaaagactttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttaatcttaaagagttagtttatagagcgtattcccgttttaacaatgagaaagactttc 447

                                                                       
Query: 185 ttgcccacattcaatcatatggggatagccagttcataccttacatatatatcaagcaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttgcccacattcaatcatatggggatagccagttcataccttacatatatatcaagcaga 387

                                                                       
Query: 245 tgagagcctgtttaaacctcataaggaataaaacctggcaacagcagagacagctaccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgagagcctgtttaaacctcataaggaataaaacctggcaacagcagagacagctaccaa 327

                                                                       
Query: 305 gtaagtagtagcaaagtcagctgcctgctgaaagtcactttttctacctttgctgttttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtaagtagtagcaaagtcagctgcctgctgaaagtcactttttctacctttgctgttttc 267

                                                                       
Query: 365 cctgtttctccctcagaaaaattacactagaaataaaatttggggtattgaaaccacaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cctgtttctccctcagaaaaattacactagaaataaaatttggggtattgaaaccacaga 207

                                                                       
Query: 425 tcattaaaaaaaattatttttaaattggagcgcatttatttatttgtaatatgtgtcttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tcattaaaaaaaattatttttaaattggagcgcatttatttatttgtaatatgtgtcttt 147

                                          
Query: 485 attttttatgacttattttatttttaatttt 515
           |||||||||||||||||||||||||||||||
Sbjct: 146 attttttatgacttattttatttttaatttt 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_f16.g1 MSMg01no417_f16.g1 CHROMAT_FILE:
MSMg01no417_f16.g1 PHD_FILE: MSMg01no417_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:13 2005
         (446 letters)



>mm_chr1_66109107_66109952
          Length = 846

 Score =  862 bits (446), Expect = 0.0
 Identities = 446/446 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcactaacaagagtctgggttggactggctgctggggagtttgtgacatactaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcactaacaagagtctgggttggactggctgctggggagtttgtgacatactaggtg 260

                                                                       
Query: 61  acacccctggagtcacttcgcttcaactccagcttggaagtgcctgcctggctcagggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacccctggagtcacttcgcttcaactccagcttggaagtgcctgcctggctcagggtc 320

                                                                       
Query: 121 tgcactgcagcctactccttgctccagggcctgactgcagggccagagcctatcccatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcactgcagcctactccttgctccagggcctgactgcagggccagagcctatcccatag 380

                                                                       
Query: 181 aggcacgacagcagccactcaaaccaaccacacctcccaggcaaactgaaccatgaacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcacgacagcagccactcaaaccaaccacacctcccaggcaaactgaaccatgaacac 440

                                                                       
Query: 241 cgaaacgtatcagacccccatggaggtggtggtctatcagctgcacactttctccatctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgaaacgtatcagacccccatggaggtggtggtctatcagctgcacactttctccatctc 500

                                                                       
Query: 301 cttcttctcttctctgcttgaaggggatgtggtttccgataaactggataacagtgcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcttctcttctctgcttgaaggggatgtggtttccgataaactggataacagtgcctc 560

                                                                       
Query: 361 cggagccagtgtggtggccctagacaacaagattgagcaggccatggatctagtgaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggagccagtgtggtggccctagacaacaagattgagcaggccatggatctagtgaggaa 620

                                     
Query: 421 tcttctgatgtgagagaggaggtgga 446
           ||||||||||||||||||||||||||
Sbjct: 621 tcttctgatgtgagagaggaggtgga 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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