Query= MSMg01no417_i06.b1 MSMg01no417_i06.b1 CHROMAT_FILE:
MSMg01no417_i06.b1 PHD_FILE: MSMg01no417_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:25 2005
(540 letters)
>mm_chr1_153150017_153150956
Length = 940
Score = 638 bits (330), Expect = 0.0
Identities = 366/378 (96%), Gaps = 4/378 (1%)
Strand = Plus / Minus
Query: 157 cccctggaactgaagttacacttgggaatgccataactgaactcccaactatttttgtat 216
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 936 cccctggaactggagttacacttgggaatgccataattgaactcccaactatttttgtat 877
Query: 217 gctaaattgaaggttttattta-tttatttgtgccctttttttttttaaatgggttcttc 275
||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||||||||
Sbjct: 876 gctaagttgaaggttttatttattttatttgtg-ccttttttttttt-aatgggttcttc 819
Query: 276 ataacctatgctggcctcaaatttacaatccatttgaggctagtcttgaactcctgat-t 334
||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 818 atagcttatgttggcctcaaatttacaatccatttgaggctagtcttgaactcctgatct 759
Query: 335 tctgctgggattataggcatgtatcatgtgtcactatatctgtatcataaatcaagttta 394
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tctgctgggtttataggcatgtatcatgtgtcactatatctgtatcataaatcaagttta 699
Query: 395 aaacaacaacaatgaaaagaacccactatatagtcaaaaggaaacaatcccccaaagtag 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaacaacaacaatgaaaagaacccactatatagtcaaaaggaaacaatcccccaaagtag 639
Query: 455 tgtttacttaaagagattcccttgacacttctgtaatgtgatctattttgagccagcaca 514
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 638 tgtttacttaaagagattcccttgacacttctgtaatgtgatctattttaagccagcaca 579
Query: 515 gcatgtggtcacaggcag 532
||||||||||||||||||
Sbjct: 578 gcatgtggtcacaggcag 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_i06.g1 MSMg01no417_i06.g1 CHROMAT_FILE:
MSMg01no417_i06.g1 PHD_FILE: MSMg01no417_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:25 2005
(504 letters)
>mm_chr1_152955566_152956469
Length = 904
Score = 893 bits (462), Expect = 0.0
Identities = 492/502 (98%)
Strand = Plus / Plus
Query: 3 gaattcatactcctcctacagaggctaattctttaacctggttgggagggattattttgg 62
||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 203 gaattcatattcctcctgcagaggctcattctttaacctggttgggagggattagtttgg 262
Query: 63 aaccatcacaagatatccttaagaaccattcagcttcaaaagaatattgtaattagatgg 122
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaccatcacaaggtatccttaagaaccattcagcttcaaaagaatattgtaattagatgg 322
Query: 123 gctgtatacggattggggttttctcaacaaatcactgttagaaacagtatttaatatggg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctgtatacggattggggttttctcaacaaatcactgttagaaacagtatttaatatggg 382
Query: 183 aaattacagtcaccgctgatgaagagagtgttttccattgagaaattgaagtcttgttaa 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 aaattacagtcaccgctgatgaagagagtgttttccattgagaaattgaagtcttgctaa 442
Query: 243 attaggctttacgtcaaacatttactcagttagaagtagtatacaatatgaagggtgttt 302
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 attaggcttcacgtcaaacatttactcagttagaagtagtatacaatatgaagggtgttt 502
Query: 303 tactatatatagacgagtttagtgcaattagaagcatttctgtatttattcttcgcacta 362
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tactatatatagatgcgtttagtgcaattagaagcatttctgtatttattcttcgcacta 562
Query: 363 atgtttaattcatttgactgtcttgagtgcagtgtggtaagattgctgatgcacgtgaga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgtttaattcatttgactgtcttgagtgcagtgtggtaagattgctgatgcacgtgaga 622
Query: 423 tgagttgtatttaaatcaataaaacatgactgagcagtttcagtttggaacactatccac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 623 tgagttgtatttaaatcaataaaacatgactgagcagtttcagtttggaacactatctac 682
Query: 483 ttcttcccatttcacacaacct 504
||||||||||||||||||||||
Sbjct: 683 ttcttcccatttcacacaacct 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
