BAC Information

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BAC

Clone NameMSMg01-417I24
Chromosome1 (Build37)
Map Location 108,005,737 - 108,006,128
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634
Downstream genePhlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417I24.T7 (MSMg01no417_i24.b1)MSMg01-417I24.TJ (MSMg01no417_i24.g1)
ACCAG513113AG513114
length800791
length of high quality
(start - end)		392 (70 - 461)441 (75 - 515)
definitionCHROMAT_FILE: MSMg01no417_i24.b1 PHD_FILE: MSMg01no417_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:28 2005CHROMAT_FILE: MSMg01no417_i24.g1 PHD_FILE: MSMg01no417_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGTCCTAATGTCANNNNNNGNNCNNTATATTCAGAGGATCCGCGGAATT
CCATCCTGTTCCCGACTCAGCAGAAGGTCTCACTGTCAGTCATGAACTTG
GCAGTCCTAACTAGCCACTGGAATGAGGTACTTGGAACATGCAATACTCG
GAAGCTCTAGTTTATGTTCAATTATTGGCTTCCTTGGACAGCATCTGTGT
TCAGAGGCAGCTCTTATAAAACTGACATGGGATGACCTCATTCCCTCCCA
TTGCCCTTCAGAGGCGAACAACAGACTAGAAAAGCTGCTGTCTGTTTAAA
TTGCCAAGCAGGAAGCAGTCCGGAGGGCAGGCTTTGTGCTACCTTGAGTG
ATAGAGACTTCCAAGGAGGAATTGGAGAGTGCTTTATTGTTTTACAAAGT
GTGAAGTCCTAACAACTGTCCCTTAGGCTGTAGATGAGTGTTGGTTGTCC
AGACTGTGGGCTGTGGAAGAGACCCTACCTCTGGGAAAGCTGGGCTGCTG
CGAGCAGAGTGTATAAAGCCACCACCTTACAAGCCTGGCCATCCTATTGA
GCTATTGGATCTGGGCAAGAAGTGCCTGCCTAAAAATCTGGTTGTCCGTC
CCGAAATGGTGCCCTATAAACACACGGGTTGTACCCTAACATCCCTCCGA
TCCTATAATGTGTTGTTGTCTCCCCCTTTCGGCCCTCTATTATTTGCAAC
CTATACTTCCTTACTTCCCACTTATAGGTTCCTATTTCCCCACCTTCTTT
CTCTATAATGTCATCACCTTCTTTTTCCCTCCTTTTATTCCGTCTCGATN


ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGGTAATAAGGCTGTACTTCAATGT
CCCTCCCATCATCAAAGGATTTCACCTCTATAGTAGCTAAGCTAAGAGCT
GACAGTTCTGTTGTGCCAAGCAATGAATTGTAGGCACAATTATTTGGACA
CATATTTCCTGCTATGGTCAAAGATATTTGACTTGAGTGATTGTCATCAT
TCTCAGCCCACAGGGAATAGGTTATATTCATTTAAGAAATGGTGTGTGAG
CTGGGCGGTGGTGGTGCACACCTTTAATCCGAGCACTCGTTAGGCAGAGG
CACGCGGATTTCTGAGTTCGAGGACAGCTTGGTCTACAAAGTGAGTTCCA
GGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACTAAAAAAGA
AAAAAGAAAAGAAAAGAAAAGAAGAAATGGTGTGTGTATTAAGATGGTCT
ATCCATGAAGTAGTTCATCAACTGTTTTAATGAACAATGGTTCTGCTTGG
AGGNTAGCACAGACATTAGGTGAGGGTAAGATTCGGGTTCATTGGCTGTT
ATGATTTTGAAAGCACTCCTCTCCCAAAAAGAGAATTTTATAAGGCCCCC
TCCTTCTACCTGGTTCCCTATTTTAATTTTCTACCAAAAATCCTTCCCCC
TCCTTTTGGGTCCCTCACCCCCACCCCCCCCATATTTGTCCTGTTCCTTT
TGTTTGGCAAAAAAACCCTCAAATTTGCCCCTTATTTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_i24.b1 MSMg01no417_i24.b1 CHROMAT_FILE:
MSMg01no417_i24.b1 PHD_FILE: MSMg01no417_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:28 2005
         (392 letters)



>mm_chr1_108005537_108006328
          Length = 792

 Score =  727 bits (376), Expect = 0.0
 Identities = 388/392 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagaaggtctcactgtcagtcatgaacttggcagtcctaactagccactggaatgaggt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagaaggtctcactgttagtcatgaacttggcagtcctaactagccactggaatgaggt 260

                                                                       
Query: 61  acttggaacatgcaatactcggaagctctagtttatgttcaattattggcttccttggac 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttggaacatgcaatactcagaagctctagtttatgttcaattattggcttccttggac 320

                                                                       
Query: 121 agcatctgtgttcagaggcagctcttataaaactgacatgggatgacctcattccctccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatctgtgttcagaggcagctcttataaaactgacatgggatgacctcattccctccc 380

                                                                       
Query: 181 attgcccttcagaggcgaacaacagactagaaaagctgctgtctgtttaaattgccaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgcccttcagaggcgaacaacagactagaaaagctgctgtctgtttaaattgccaagc 440

                                                                       
Query: 241 aggaagcagtccggagggcaggctttgtgctaccttgagtgatagagacttccaaggagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaagcagtccggagggcaggctttgtgctaccttgagtgatagagacttccaaggagg 500

                                                                       
Query: 301 aattggagagtgctttattgttttacaaagtgtgaagtcctaacaactgtcccttaggct 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 aattggagagtgctttattgttttacaaagtgtgaagtcctaagaactgtcccttaggct 560

                                           
Query: 361 gtagatgagtgttggttgtccagactgtgggc 392
           ||| ||||||||||||||||||||||||||||
Sbjct: 561 gtaaatgagtgttggttgtccagactgtgggc 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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