Query= MSMg01no417_j08.b1 MSMg01no417_j08.b1 CHROMAT_FILE:
MSMg01no417_j08.b1 PHD_FILE: MSMg01no417_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:30 2005
(507 letters)
>mm_chr1_107581497_107582404
Length = 908
Score = 890 bits (460), Expect = 0.0
Identities = 493/504 (97%), Gaps = 1/504 (0%)
Strand = Plus / Plus
Query: 5 gaattcattttgtaagtctgtcttttcaaagcattggtatcttctaatgacatttggcaa 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttggaagtctgtcttttcaaagcattggtatcttctaatgacatttggcaa 264
Query: 65 tatgtatgtagatgtttgtaaaattataaattcttgccgtctgacatgggttttctggct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgtatgtagatgtttgtaaaattataaattcttgccgtctgacatgggttttctggct 324
Query: 125 ttctgtgcctattcactctttgttttgttcctggtcaccagtttaatttgagcatttccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctgtgcctattcactctttgttttgttcctggtcaccagtttaatttgagcatttccc 384
Query: 185 actttgtgttttaaccagttttctcccttccctcccttctccctacccccc-cttttttt 243
||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||
Sbjct: 385 actttgtgttttaaccagtttcctcccttcgctcccttctccccaccccccttttttttt 444
Query: 244 ctgtcattctggtgtagggcatttctgatctgcaattgttctgtagtatattttggataa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtcattctggtgtagggcatttctgatctgcaattgttctgtagtatattttggataa 504
Query: 304 ttttaagcaatattgagagcataatatctatacttttaccttatgcatagtctagctagg 363
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 ttttaagcgatattgagagcataatatctatacttttaccttatgcatagtctagttagg 564
Query: 364 tgctttttcttccaaaatttcatagaattttccattttttttaaaaatgaacaaatctct 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 tgctttttcttccaaaatttcatagaattttccatttttttaaaaaatgaacaaatctct 624
Query: 424 acataaatgtattcagttatgtaaataatctgactttaataaaaactcttaaagtatttc 483
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 625 acataaatgtattcagttatgtaaataatctgactttaacaaaaactcttaaagtgtttc 684
Query: 484 aaggaattgcagttcaggggaaat 507
||||||||||||||||||||||||
Sbjct: 685 aaggaattgcagttcaggggaaat 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 908
Length adjustment: 10
Effective length of query: 497
Effective length of database: 898
Effective search space: 446306
Effective search space used: 446306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_j08.g1 MSMg01no417_j08.g1 CHROMAT_FILE:
MSMg01no417_j08.g1 PHD_FILE: MSMg01no417_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:30 2005
(432 letters)
>mm_chr1_107788472_107789303
Length = 832
Score = 828 bits (428), Expect = 0.0
Identities = 431/432 (99%)
Strand = Plus / Minus
Query: 1 cattatcttaaaattgctggtaattcttccccctgagatgaagttttgataaaggcaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cattatcttaaaattgctggtaattcttccccctgagatgaagttttgataaaggcaaca 573
Query: 61 agcaaagaaaagaagctgagggcctgcgatttcaatggcaaagaagagaataggacacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agcaaagaaaagaagctgagggcctgcgatttcaatggcaaagaagagaataggacacag 513
Query: 121 ggaaaccgaaggcccctgaggtcagagtgtcctgtttcacagtgttcctgggaaggacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggaaaccgaaggcccctgaggtcagagtgtcctgtttcacagtgttcctgggaaggacca 453
Query: 181 gagacagcagctgccttggaaggactgaaggacgctgccagtttgaggatgcagccctgt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gagacggcagctgccttggaaggactgaaggacgctgccagtttgaggatgcagccctgt 393
Query: 241 gggacactttgtcatttttaaaccgtatctttgtgatcacttagcaggtacactgggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gggacactttgtcatttttaaaccgtatctttgtgatcacttagcaggtacactgggaaa 333
Query: 301 cagcacagagcctggatctcttctccatcactcataaaccagcattttgctttgattttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cagcacagagcctggatctcttctccatcactcataaaccagcattttgctttgattttg 273
Query: 361 aacagaatgtgtgataattatgtcggtatctctaagaacatcccacaaacccttttgaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aacagaatgtgtgataattatgtcggtatctctaagaacatcccacaaacccttttgaat 213
Query: 421 gtcagcaagaag 432
||||||||||||
Sbjct: 212 gtcagcaagaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
