BAC Information

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BAC

Clone NameMSMg01-417J21
Chromosome1 (Build37)
Map Location 88,819,928 - 88,820,462
singlet/doubletsinglet
Overlap gene4930429A22Rik
Upstream gene4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, EG620213
Downstream geneLOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417J21.T7 (MSMg01no417_j21.b1)MSMg01-417J21.TJ (MSMg01no417_j21.g1)
ACCAG513155AG513156
length756760
length of high quality
(start - end)		521 (72 - 592)535 (78 - 612)
definitionCHROMAT_FILE: MSMg01no417_j21.b1 PHD_FILE: MSMg01no417_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:33 2005CHROMAT_FILE: MSMg01no417_j21.g1 PHD_FILE: MSMg01no417_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCTCACCTGTATCCATACCGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAG
ATTCCACTTCACTCCTGTCAGAATGACTAAGATCAATAACTCAGGTAACA
GCAGATGCTGGTGAGGATGTGGAGAAAGGGGAACATTCCTCCATTGTTGG
TGGGATTGCAAACTTGTACAACCCTTCTGGAAATCAGTCTGGCAGTTCCT
CAGAAAATTGGACGTAGTTCTACCGGAGGATCCCGCAATACCTCTCCTGG
GCATATATCCAGAAGATGTCCTAACCGGTAAGAAGAACACATGCTCCACT
ATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCTCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAA
TGGAATATTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCA
AATGGATGGACCTGGAAGGTATCATCCTGAGTGAAGTAACCCAATCACAA
AGGAACTCGCACAATATGTACTCACTGATAAGTGGATATTATCCCAGAAA
TTTACGATACCCAAGATATAATATACAACTTGTCAAACGCCTGAAATTGA
ATAATAACGAAGAACAATACGTGTACCCTTTACCCCTTTCTTTTAACAGG
GTAAAA

NCCGATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGGACATTGGAAGAACAGCT
GTAAAATGATCTACAAAGACCCATCAGAGGTGAGTCTCAAGGTTGCTCAA
GGCTGAGGGTCAGCAGTTTTAAGTCAGCCCGGGCTACAAAATGAGTGTTG
GGGTAGCTTGGGCCTCATAGCAAATTCCCAAACCCCCTTTCCCCATGAAC
GACTCCCCAGAGGTCACCATTCAGCCATATTTGCTTCTTCTGTTTCCCTC
CACATATCTTGCTTTATGCACTGGATTATTTTCTCTTCCTATCTGAACTC
CTGTAGGAGCAGTGCTGCGGAACTCTCCATGCCCTCGGGACTGCAGTATG
TGTTTGGAGACTAAGGGCATTCTACGGCACCACAATATTACAGTCTAAAC
CAAGAAGGCAGTGGTACCACACCCAGTTTGTAAGTCATACATATGCATCT
TCAACTGTTTATCACAAGACTTCACCAGTTTTTCTCTTCCTGATCCAGAA
CTGGGTCAGTTTCTACACTGTACTTGTTAGCTACGCCTTTTTTGTCCTTT
ACTATCCTATCTAGCTGTCTTTTACCACAACACTGCTGGTTTACAAGAAC
CANGCCAGTTGTCTCATATGTCCACCTGGTCTGTTAAACTGAAATTTTTC
CTCCAAGAAAAAATAAAAGAACCTGTATGATTAATTATATCCTTCCCTAT
AACCTCTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_j21.g1 MSMg01no417_j21.g1 CHROMAT_FILE:
MSMg01no417_j21.g1 PHD_FILE: MSMg01no417_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:33 2005
         (535 letters)



>mm_chr1_88819585_88820519
          Length = 935

 Score = 1011 bits (523), Expect = 0.0
 Identities = 532/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagggacattggaagaacagctgtaaaatgatctacaaagacccatcagaggtgagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 tcagggacattggaagaacagctgtaaaatgatctacaaagacccatcagaggtgagtct 819

                                                                       
Query: 61  caaggttgctcaaggctgagggtcagcagttttaagtcagcccgggctacaaaatgagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 caaggttgctcaaggctgagggtcagcagttttaagtcagcccgggctacaaaatgagtg 759

                                                                       
Query: 121 ttggggtagcttgggcctcatagcaaattcccaaaccccctttccccatgaacgactccc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 758 ttggggtagcttgggcctcatagcaaattcacaaaccccctttccccatgaacgactccc 699

                                                                       
Query: 181 cagaggtcaccattcagccatatttgcttcttctgtttccctccacatatcttgctttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cagaggtcaccattcagccatatttgcttcttctgtttccctccacatatcttgctttat 639

                                                                       
Query: 241 gcactggattattttctcttcctatctgaactcctgtaggagcagtgctgcggaactctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 638 gcactggattattttctcttcctatctgaactcctgtaggagcagtgctgcagaactctc 579

                                                                       
Query: 301 catgccctcgggactgcagtatgtgtttggagactaagggcattctacggcaccacaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 catgccctcgggactgcagtatgtgtttggagactaagggcattctacggcaccacaata 519

                                                                       
Query: 361 ttacagtctaaaccaagaaggcagtggtaccacacccagtttgtaagtcatacatatgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttacagtctaaaccaagaaggcagtggtaccacacccagtttgtaagtcatacatatgca 459

                                                                       
Query: 421 tcttcaactgtttatcacaagacttcaccagtttttctcttcctgatccagaactgggtc 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 458 tcttcaactgtttatcacaagacttcaccagtttttctcttcctgaaccagaactgggtc 399

                                                                  
Query: 481 agtttctacactgtacttgttagctacgccttttttgtcctttactatcctatct 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agtttctacactgtacttgttagctacgccttttttgtcctttactatcctatct 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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