BAC Information

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BAC

Clone NameMSMg01-417K02
Chromosome1 (Build37)
Map Location 168,292,797 - 168,293,350
singlet/doubletsinglet
Overlap genenone
Upstream geneIqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795
Downstream geneTada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417K02.T7 (MSMg01no417_k02.b1)MSMg01-417K02.TJ (MSMg01no417_k02.g1)
ACCAG513165AG513166
length750756
length of high quality
(start - end)
577 (46 - 622)---
definitionCHROMAT_FILE: MSMg01no417_k02.b1 PHD_FILE: MSMg01no417_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:34 2005CHROMAT_FILE: MSMg01no417_k02.g1 PHD_FILE: MSMg01no417_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAGGATCCG
CGGAATTCACTGATTACCAGCTAGGGCACAGGAAGACGATAAATCAACAA
ACAGGGGGAACAGAGCTCTCACAGAAACCAAATTTCCTAGCCTCTTGATT
TTAGACTTCTAGCCTTCAACAGTATGGAAATCCATCAGGACCCAGGCATT
ACTGTATGTGTGTCTATCCTTTCTTCATTCCCTCTTTGCTCCTAGCCAGC
TTCTAGTATCCAAGCCACATGGGATACTGGCACGTAGCCTAACCAGTGCA
AGGCGAGTGTCTGCAAGCTTTATAATGCACACAAATTCTAAAGGGTCTGT
GGACAGAACTGTTTCAATAAAACTGTGTCAAGTGTAAACATATGTGAGTA
GTCATTTGAAAACATTATTCTTAGAATGACTTCAAAGGCATCAACAGACT
GCCAATAAGATCCAAGATGCAAACCCAAACAAAACCCCAGACAAAACCAA
AACAACTCTTCCTCTGACCAACTTCTTTATTGTTGGTTCATCTCTCAACT
TGTAAACCATAAATTATACCAGGGTCCAATATAACTCAAGTCTATTACTT
TCAACTATATTAGACTCTATTGTTTGATACAGTGAGATGCGAAAGAATAG
CATACCGACTCCTCTAATGCATCTGACATTTACCAGGCCTTTGCATTGAG
TATGACCCCCTAATACCACTATGTAGCTTATGTATAGTCTTACATGCTTN

GAGGAATGGNNNNNNNNNNAAGTGNNNNTTGTTGGGTGTGTGAGATTGNN
TGNNNTGAGGGANNNACCAATGATANNGNATAAGAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAATT
GATTCATTCTTATCTCCTTGGCCTAAGGTCAAAACTAAGGGGGATCCGGG
GACTTTCCCTTAAACCCGGAAAACCTGGAACTTTTTAGGGGAAAAAAAAG
GGAAACCCTCTAAAAAAATTAAACCAGGGGAAAAAATTCTTGAAAAAAAA
AAAAAGGGGGGTGTGGGGTGAAAAAATAAAATATGACAAGGGGGCCCCCT
TATATTTTGTAAAATTTTTTTGTGGGGGAAAAAAACCCCTTCTTTCTTAA
AATAAAAGGGCCCCCCCCCATTGGGGGGGGGGAAGGTTTTTTTTTCTTCT
TTATTACAAGGGGGGGGGGAAATTTTTCTCTTTGTTGTGTAAAAACACCC
CAGGGGGGGGGCCTCTCCAAAAAAAAAAATACTCCTCCTTTTTTGGGGGG
GGGGGGCGGAAAAAAAAAAAAAAATCTCCTCCTTCCCCCACCAAAAGAAG
GAGGGGGGGGTATAATACCCCCCCAAAAAAAAGAATNTTTCTCCCCTCTT
CTCTTCCCCCGCCGAGAAAAAAAAAAATAGAAGAAAAAAGGGGGGGCGTT
TCTTTTCTTTTTTTTCGACATTATGAGTAGTGGAGAGCGTTTACTACCTT
TTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_k02.b1 MSMg01no417_k02.b1 CHROMAT_FILE:
MSMg01no417_k02.b1 PHD_FILE: MSMg01no417_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:34 2005
         (577 letters)



>mm_chr1_168292574_168293550
          Length = 977

 Score = 1071 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 24  agctagggcacaggaagacgataaatcaacaaacagggggaacagagctctcacagaaac 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 agctagggcacaggaagacgataaatcaacaaacagggggaacagagctctcacagaaac 283

                                                                       
Query: 84  caaatttcctagcctcttgattttagacttctagccttcaacagtatggaaatccatcag 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 caaatttcctagcctcttgattttagacttctagccttcaacagtatggaaatccatcag 343

                                                                       
Query: 144 gacccaggcattactgtatgtgtgtctatcctttcttcattccctctttgctcctagcca 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gacccaggcattactgtatgtgtgtctatcctttcttcattccctctttgctcctagcca 403

                                                                       
Query: 204 gcttctagtatccaagccacatgggatactggcacgtagcctaaccagtgcaaggcgagt 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gcttctagtatccaagccacatgggatactggcacgtagcctaaccagtgcaaggcgagt 463

                                                                       
Query: 264 gtctgcaagctttataatgcacacaaattctaaagggtctgtggacagaactgtttcaat 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtctgcaagctttataatgcacacaaattctaaagggtctgtggacagaactgtttcaat 523

                                                                       
Query: 324 aaaactgtgtcaagtgtaaacatatgtgagtagtcatttgaaaacattattcttagaatg 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaaactgtgtcaagtgtaaacatatgtgagtagtcatttgaaaacattattcttagaatg 583

                                                                       
Query: 384 acttcaaaggcatcaacagactgccaataagatccaagatgcaaacccaaacaaaacccc 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 acttcaaaggcatcaacagactgccaataagatccaagatgcaaacccaaacaaaacccc 643

                                                                       
Query: 444 agacaaaaccaaaacaactcttcctctgaccaacttctttattgttggttcatctctcaa 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agacaaaaccaaaacaactcttcctctgaccaacttctttattgttggttcatctctcaa 703

                                                                       
Query: 504 cttgtaaaccataaattataccagggtccaatataactcaagtctattactttcaactat 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cttgtaaaccataaattataccagggtccaatataactcaagtctattactttcaactat 763

                         
Query: 564 attagactctattg 577
           ||||||||||||||
Sbjct: 764 attagactctattg 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)