Query= MSMg01no417_o21.b1 MSMg01no417_o21.b1 CHROMAT_FILE:
MSMg01no417_o21.b1 PHD_FILE: MSMg01no417_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:58 2005
(617 letters)
>mm_chr1_190187993_190189010
Length = 1018
Score = 1143 bits (591), Expect = 0.0
Identities = 608/617 (98%), Gaps = 7/617 (1%)
Strand = Plus / Plus
Query: 5 gaattccaatatga----ttacttaattttctctctgacacgtggttccaccttaataaa 60
|||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatatgagaaatt---taattttctctctgacacgtggttccaccttaataaa 261
Query: 61 acactagttattttcctgcagttggtacatacataaaatatagttaaatgaaaagaggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acactagttattttcctgcagttggtacatacataaaatatagttaaatgaaaagaggtt 321
Query: 121 atgggcctgtggacaaatatagctttgtggaatacatagacataataaaaacaaagggta 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atgggcctgtggacagatatagctttgtggaatacatagacataataaaaacaaagggta 381
Query: 181 ttaaaatatagtatttgaaagagtcaaagtgaagaattttctgaagttgaggatttcacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttaaaatatagtatttgaaagagtcaaagtgaagaattttctgaagttgaggatttcacg 441
Query: 241 gcttttctgaacagattcagaaaagacacatggatcaaacataatgggtctgacaactgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcttttctgaacagattcagaaaagacacatggatcaaacataatgggtctgacaactgc 501
Query: 301 caaagacaaagaacagatcctgcaagtaccaaagaggatgaaacacatgacaagacacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caaagacaaagaacagatcctgcaagtaccaaagaggatgaaacacatgacaagacacag 561
Query: 361 ggtcagaagagtctggtgaaattatgtttctcaataagcacagatgaacccagggcctag 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggtcagaagagtccggtgaaattatgtttctcaataagcacagatgaacccagggcctag 621
Query: 421 aatagaacctgcaaagggaggttgcaagtagccaacaagcccacatcggcaactgtagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aatagaacctgcaaagggaggttgcaagtagccaacaagcccacatcggcaactgtagat 681
Query: 481 agacttgctttaaagccaggaagaataaagagtggtcaagaaaatttgtgtcaagattat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agacttgctttaaagccaggaagaataaagagtggtcaagaaaatttgtgtcaagattat 741
Query: 541 caccaataggtgggatactttaggtcttaatatggtattaattatggtcatgtagaagct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 caccaataggtgggatactttaggtcttaatatggtattaattatggtcatgtagaagct 801
Query: 601 gctttcatgcaagtgta 617
|||||||||||||||||
Sbjct: 802 gctttcatgcaagtgta 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_o21.g1 MSMg01no417_o21.g1 CHROMAT_FILE:
MSMg01no417_o21.g1 PHD_FILE: MSMg01no417_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:58 2005
(498 letters)
>mm_chr1_190358550_190359447
Length = 898
Score = 561 bits (290), Expect = e-164
Identities = 328/344 (95%), Gaps = 6/344 (1%)
Strand = Plus / Minus
Query: 1 agcttgcctggatagacaacaaaagccatcttgtcagcctccctacatccctggtggtaa 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 338 agcttgcctggatagacaacaaaagccatcttgccagcctccctacatccctggtggtaa 279
Query: 61 cttctattagtttcatattggagtatgtttttgtatgctgaaagtaaggtgtgtatatgt 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 278 cttctattagtttcatattggagtatttttttgtatgctgaaagtaaggtgtgtatatgt 219
Query: 121 gctacatgtttgcgactatgtgtgcattcgtgtgtgtgtgtgtgtgtgtgtgtgtaactt 180
||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct: 218 gctacatgtttgcgactatgtgtacattc------atgtgtgtgtgtgtatgtgtaactt 165
Query: 181 gatacaggttatagtcatctgaaaggagagaatcccagttgagagggtgtcttcataagg 240
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 164 gacacaggttatagtcatctgaaaagagagaatcccagttgagagggtgtcttcataagg 105
Query: 241 ttgtcctataggctagcctgtgtagtattctcttgattaatggttgatgtggaagtacct 300
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ttggcctataggcaagcctgtgtagtattctcttgattaatggttgatgtggaagtacct 45
Query: 301 agcccattttggatagtgccacccctggctagaatgccctggaa 344
||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 44 agcccattttggatagtgccacccctggccagaatgccctggaa 1
Score = 56.8 bits (29), Expect = 3e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 147 ttcgtgtgtgtgtgtgtgtgtgtgtgtgt 175
|||||||||||||||||||||||||||||
Sbjct: 674 ttcgtgtgtgtgtgtgtgtgtgtgtgtgt 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
