BAC Information

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BAC

Clone NameMSMg01-417P16
Chromosome1 (Build37)
Map Location 34,802,696 - 34,803,117
singlet/doubletsinglet
Overlap genenone
Upstream geneBag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741
Downstream geneArhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417P16.T7 (MSMg01no417_p16.b1)MSMg01-417P16.TJ (MSMg01no417_p16.g1)
ACCAG513429AG513430
length777770
length of high quality
(start - end)		513 (72 - 584)422 (75 - 496)
definitionCHROMAT_FILE: MSMg01no417_p16.b1 PHD_FILE: MSMg01no417_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:02 2005CHROMAT_FILE: MSMg01no417_p16.g1 PHD_FILE: MSMg01no417_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGTACCAAACCAAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAATTGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTGCATTGTTGGT
GGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAATTGAACATAGTACTACCGGAAGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCTCCAACCGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCGTGGATACAGAATGGATACAGAAAATGTGGTACATTTACACA
ATGGAATACTACTCAACTATTAAAAAGAATGAATTTATGAAATTCCTAGG
CAAATGGATGGACGTGGAGGGCATCATCCTGAGTGAGGTAACCAATCCCA
AAAGAACTCCCACCAAATGCCCTCACTGATACGTGGATATTAACCCAGAA
ACTGTCCTATTCGGGGATTCATTCCATAAACAGCCTCCAAAGGGTGGAAC
CCTTGTCTATGGCTTTAAAATTTTGGTGGAAAGGACCTCGACATATTTTT
TTCTCCCGGAAAAAATGTCCGCGTTTA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGCCGCATGGCTGATGAGTAGTCT
GCAGTAAACATTTGTAGAGAAAGCACCCAGGTACCCTGCTGTCTCAGCCC
TAGCCATGGGTGCCTGCCTTCCTCGAGGTTTACATCAGCAGTCTCTTGGT
TCATTTCCCAGAATTACAGTAAGGAGCATCTCAGCACACACTCACCTACA
AGGGAGCTGAAGCATGCCAGAAGGGCAGAGGGCTCCAAATGAGCCAGGGC
CAATCTCTTCCTTAACCGTATCTGGGACAGGGGCTGGGTGCTGAGAGATG
CTGCCAGACTCTTGGCAGATGGACAGATTCAGTAGTCCTAAGCAGGTGCG
TGTTGTGTGTGATAGATCGAAAGCATTCAGCTGGCTGCCAGGGAGGCAGG
TTTGTAAGTCAGCCCGACTAGGGCAGAGCCTGAGACAGAGTTTAAAACAA
ACACACAAAATCACTTGAGAAAACAAAACATTTCCTTTTGCCATGGGTGT
GGAGGGGGCACCCAGGTCATTAGTCAAGGGCATTGCAGGCGATGGGCAGT
GAACCCTATAAGCAAAATTTGTTGGCGGATGACTGAAAAAGTATTTGTAC
AAATTTTTGGGTCTTGCCCCCCAACCCATTTATGTTGTTTGTCTTTATCT
CCGCTTTTTTCCCTTTTTTTCTCTCCTTTTCTTTTTTCCCTCCCACTTTG
TTTTTGCCGCTTCTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_p16.g1 MSMg01no417_p16.g1 CHROMAT_FILE:
MSMg01no417_p16.g1 PHD_FILE: MSMg01no417_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:02 2005
         (422 letters)



>mm_chr1_34802496_34803317
          Length = 822

 Score =  777 bits (402), Expect = 0.0
 Identities = 417/422 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgccgcatggctgatgagtagtctgcagtaaacatttgtagagaaagcacccaggtac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 catgccgcatggctgatgagtagtctgcagtaaacatttgtagagaaagcactcaggtac 260

                                                                       
Query: 61  cctgctgtctcagccctagccatgggtgcctgccttcctcgaggtttacatcagcagtct 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccgctgtctcagccctagccatgggtgcctgccttcctcgaggtttacatcagcagtct 320

                                                                       
Query: 121 cttggttcatttcccagaattacagtaaggagcatctcagcacacactcacctacaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttggttcatttcccagaattacagtaaggagcatctcagcacacactcacctacaaggg 380

                                                                       
Query: 181 agctgaagcatgccagaagggcagagggctccaaatgagccagggccaatctcttcctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgaagcatgccagaagggcagagggctccaaatgagccagggccaatctcttcctta 440

                                                                       
Query: 241 accgtatctgggacaggggctgggtgctgagagatgctgccagactcttggcagatggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accgtatctgggacaggggctgggtgctgagagatgctgccagactcttggcagatggac 500

                                                                       
Query: 301 agattcagtagtcctaagcaggtgcgtgttgtgtgtgatagatcgaaagcattcagctgg 360
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 501 agattcagtagtcctaagcaggtgtgcgttgtgtgtgatagatcgaaagcattcagctgg 560

                                                                       
Query: 361 ctgccagggaggcaggtttgtaagtcagcccgactagggcagagcctgagacagagttta 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgccagggaggcaggtttgtaagacagcccgactagggcagagcctgagacagagttta 620

             
Query: 421 aa 422
           ||
Sbjct: 621 aa 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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