NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGCTCTATACCTCCTTTTTAATAGGATATTTTGTT
TCTCTGGAGTCTAACTTCTTGAGTTCTTTATATATATTGGATATTAACCT
TCTATCAGATTAAGGATTGGTGAAAATCTTTTCCCAATCTGTTGGTGGCC
TTTTTGTCTTTTTGACAGTGTCCTTTTCTTTACAGAAGCTTTGCAATTTT
ATGAGGTCCCATTTGTTGATTCTTGTTCTTACATCACAAGCCACTGGTGT
TTTGTTCAGGAATTTTTCCCCTATATCCATATTTTTGTGGCTGTTTCACA
CTTTCTCCTCTATAAGCTTTAGTGTCTTTTTTTTTTTTTTTTTTTTTTTG
GGGAGTTCCTTGATCCACTCAGAATTGACCTTAGTACAAGGAGATAAGAA
TGGATCAATTCACATTCTTCTACATGATAACTGCCAGTTGAGCCAGCACT
ATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGATTCAGCTCCTTTG
TCAAAGATTAAGTGACCGTAAGTGTGTGGGTTCATTTCTGGGTCTTCAAT
TCTATTCCATTGGTCTACTTGGCTGTTGCTATACCACTACCATGCAGTTT
TTGTCACAATTGCTCTGAGGTACAGCTTGAAGTGGGGGATGGCGATTCCA
CCAGAGGTTCTTTTATTATTGAGAATAATTT

GCNCATGGGTTGGCAGGAGAGGNCTGGAGNNNNNGAGTGNCGAAGNCTCG
ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCTGGGTGGACTCTATAGCTCTTCTGCC
ACCAAGGGAGCTATAGTAGCTAGAGAAAATAATTAACCATCTCATGTGGT
AGTCAGGAAGATATAAAACACTGTCCACAGAAGTTGGAACAATTGATAGT
CTGGGTATCAAGACATAAATTCTCCGAATTTCCCCTCCATTGCTTTTAGA
ATTTTTTTCTTTATTTCAAAGCTTATGCTTTTCTCATGTCTGTAGGCATA
AAAATACGAAACTGATTTTTGATGCTGATTTTGGATCACTATTTATCCAA
CTTGTCCTACTTAGTAATTGTGTGCTGAACTCCGTGCCTCACTGTGTTCC
TTAAATATGTTAAAGTGATGTTAGGCATCTGGCAAATATTATCATCAGAT
TATTTTGGATGAATGATGTATAAAATGCTCATAGTTTTTATTACTATTAT
CTTTTCAATCTTACCAGAACTCATAAGTTGCATTGTAGAATATAAAGTTC
TTCCAGGACTGAAATAAAAGTTATGCAATGATAAATCAATTAGAAAACTT
CCAGATGTAGAATAAGCATAATCATCAGCACATTTGCCTAAACTGTTGGA
TTGAAGAGGTGTTCTTGGCGCATCTTTAATTTGATCAAGGTGACCTGAGA
AAGCTTTTATGAACGCATGACTTGGGTTN

Query= MSMg01no418_a15.g1 MSMg01no418_a15.g1 CHROMAT_FILE:
MSMg01no418_a15.g1 PHD_FILE: MSMg01no418_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:07 2005
         (553 letters)



>mm_chr1_26217541_26218494
          Length = 954

 Score =  971 bits (502), Expect = 0.0
 Identities = 541/558 (96%), Gaps = 9/558 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgggtggactctatagctcttctgccaccaagggagctatagtagctagagaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 acctgggtggactctatagctcttctgccaccaagggagctatagtagctagagaaaata 695

                                                                       
Query: 61  attaaccatctcatgtggtagtcaggaagatataaaacactgtccacagaagttggaaca 120
           ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 694 attaaccatctcatgtggtagtcaggaagatataaaacacttttcacacaagttggaaca 635

                                                                       
Query: 121 attgatagtctgggtatcaagacataaattctccgaatttcccctccattgcttttagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 attgatagtctgggtatcaagacataaattctccgaatttcccctccattgcttttagaa 575

                                                                       
Query: 181 tttttttctttatttcaaagcttatgcttttctcatgtctgtaggcataaaaatacgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 574 tttttttctttatttcaaagcttatgcttttctcatgtctgtaggcataaaaatatgaaa 515

                                                                       
Query: 241 ctga----tttttgatgctgattttggatcactatttatccaacttgtcctacttagtaa 296
           ||||    |    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctgaaaaat----gatgctgattttggatcactatttatccaacttgtcctacttagtaa 459

                                                                       
Query: 297 ttgtgtgctgaactccgtgcctcactgtgttccttaaatatgttaaagtgatgttaggca 356
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 458 ttgtgtgctgaactccgtgcctcactgtgttccttaaatatgttaaagggatgttaggca 399

                                                                       
Query: 357 tctggcaaatattatcatcagattattttggatgaatgatgtataaaatgctcatagttt 416
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 398 tctggcaaatattatcatcagattattttggatgaatgatgtataaaatgctcatatttt 339

                                                                       
Query: 417 tt-attactattatcttttcaatcttaccagaactcataagttgcattgtagaatataaa 475
           || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tttattaccattatcttttcaatcttaccagaactcataagttgcattgtagaatataaa 279

                                                                       
Query: 476 gttcttccaggactgaaataaaagttatgcaatgataaatcaattagaaaacttccagat 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 278 gttcttccaggactgaaataaaagttatgcaatgataaatcaattagaaaacttcaagat 219

                             
Query: 536 gtagaataagcataatca 553
           ||||||||||||||||||
Sbjct: 218 gtagaataagcataatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space:   512592
Effective search space used:   512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)