Query= MSMg01no418_f15.b1 MSMg01no418_f15.b1 CHROMAT_FILE:
MSMg01no418_f15.b1 PHD_FILE: MSMg01no418_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:31 2005
(487 letters)
>mm_chr1_187261327_187262212
Length = 886
Score = 760 bits (393), Expect = 0.0
Identities = 452/475 (95%), Gaps = 7/475 (1%)
Strand = Plus / Minus
Query: 19 gagtgctcagctggggcttatgcagaggacagcggccactgacgtctggacaagttcaat 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gagtgctcagctggggcttatgcagaggacagcggccactgacgtctggacaagttcaat 827
Query: 79 gcatcttaagagcgttgtcctgaaagaggaaagccactttcgaaaattctgaggactacc 138
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gcatcctaagagcgttgtcctgaaagaggaaagccactttcgaaaattctgaggactacc 767
Query: 139 cagaagattgatagagcatcctaccaagatggggcgtgc------gtgcgtgcgtgcgtg 192
|||||||||||||||||||||||||||||||||| |||| ||| ||| ||| |||
Sbjct: 766 cagaagattgatagagcatcctaccaagatggggtgtgcgtgtgtgtgtgtgtgtgtgtg 707
Query: 193 cgtgcgtgcgtgcgtgcgtatgcagatccatgctgtccgtggcacaaaggtaggagttgg 252
||| ||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tgtgtgtgtgtgtgtgtgtgtgcagatccatgctgtccgtggcacaaaggtaggagttgg 647
Query: 253 gttacaggtctacatgtgatatgttcacgaagtgtacaaatgtcggtttctttgttttga 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gttacaggtctacatgtgatatgttcacgaagtgtacaaatgtcggtttctttgttttga 587
Query: 313 ttttgtgttgtggttttattggcacagactagacaacatgtctgtgaagactctcggtat 372
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttttgtgttgtggttttactggtacagactagacaacatgtctgtgaagactctcggtat 527
Query: 373 cgtatttgcaattttttttaatctttaaaagatagtagtttttgttgattctttgagatt 432
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cgtatttgcaa-tttttttaatctttaaaagatagtagtttttgttgattctttgagatt 468
Query: 433 cccatacgtaatgatcatacttgctcccaactctccccatgttttttttcccaat 487
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 467 tccatacataatgatcatatttgctcccaactctccccatgttttttttcccaat 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space: 417852
Effective search space used: 417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_f15.g1 MSMg01no418_f15.g1 CHROMAT_FILE:
MSMg01no418_f15.g1 PHD_FILE: MSMg01no418_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:31 2005
(442 letters)
>mm_chr1_187098716_187099557
Length = 842
Score = 812 bits (420), Expect = 0.0
Identities = 435/440 (98%)
Strand = Plus / Plus
Query: 1 gcttccacctcccatttggcctgtaaacatagtcatgcttgagtcagtgcctactgaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttccacctcccatttggcctgtaaacatagtcatgcttgagtcagtgcctactgaatc 260
Query: 61 aaggacatctttgttagcccgcagtgtaattcttatgtgttctggtggtttcttttgtaa 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggacatctttgttagcccggagtgtaattcttatgtgttctggtggtttcttttgtaa 320
Query: 121 ccactgaagattattgtgttttccacaaacagagctcttaggttctttactaggaagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactgaagattattgtgttttccacaaacagagctcttaggttctttactaggaagctc 380
Query: 181 taggcagcacagctacttgcacgcaaactgagagctgggtttaccaacctctgttgcctg 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggcagcacagctacttgcacacaaactgagagctgggtttaccaacctctgttgcctg 440
Query: 241 cctgccttccttccgttcttccgtctgcctgtcctgttatctttcagcctcccctgctcc 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 cctgccttccttccgttcttccgtctgcctgtcctgttatctttcaggctcccctgctcc 500
Query: 301 tttctttctgtctgacagagcctcactgcctagccttgaactttaaaattcaaggtctcc 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctttctatctgacagagcctcactgcctagccttgaactttaaaattcaaggtctcc 560
Query: 361 tttcctctcgtggcctgggagttcagcagtgagctgctcgaccatgcctgcagggacttt 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcctctcatggcctgggagttcagcagtgagctgctcgaccatgcctgcagggacttt 620
Query: 421 tcttattacttcaaaatata 440
||||||||||||||||||||
Sbjct: 621 tcttattacttcaaaatata 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
