BAC Information

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BAC

Clone NameMSMg01-418F20
Chromosome1 (Build37)
Map Location 194,549,928 - 194,720,221
singlet/doubletdoublet
Overlap geneHhat, A730013G03Rik, Sertad4, LOC100039677
Upstream geneLpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1
Downstream geneSyt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418F20.T7 (MSMg01no418_f20.b1)MSMg01-418F20.TJ (MSMg01no418_f20.g1)
ACCAG513720AG513721
length772778
length of high quality
(start - end)
476 (71 - 546)397 (74 - 470)
definitionCHROMAT_FILE: MSMg01no418_f20.b1 PHD_FILE: MSMg01no418_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:32 2005CHROMAT_FILE: MSMg01no418_f20.g1 PHD_FILE: MSMg01no418_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(194,719,792 - 194,720,221)(194,549,928 - 194,550,324)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATGGGTTGCCAAAAATCACATTGCTAGTTGTTCTTCACAGGTTCTT
TTTCTTACTTTCTTTATAATCCAAGATTCTTCTCTTCATCTGTCAATTGC
ATGTGGCCATCGGTATCATTGTTGCCAGCCAATGATACTAAAACAAGATG
AGGCATGTGGTAAAGCACCTTAAAGCCACAGGCTGTGCTCTCTACACTGA
CAGTACTGATGATGGTTACAGCCATAACTTAGTAAAGAGCTAACACAAGA
ATGTACTGTCTTATTTGACTCACAAAATATGAAGAGGCAAGTAACATCAT
CAGTGTTTTATTCATGAGGAAGTTGCTGCATGGAGAAGCTGAGCTGACCC
CCTAAGGCTGCCCCCTCTTAAGAAAACCCAGTAGAACTGGGATTGCTCCA
AACCCACTCATGCGCATTGTATCTTAACCCAGTTTATTACGGGTGAGAGG
AACAGCATCATATTGGGCAATTCCTGCCCAGCTTATCTGAATGGCAGAGA
GAGGCCCAAGAGAACAGAGCTGGGAAAGAGAGACGACAGTGCAGGGGGCT
TGCCTTCTCAGGACACAAACCATACTTCGGGATCATAGTTTGAATTTTTA
TTTAAAGACTTGGGATCTGTTTGTTGTGTCTACACTGTACTTCGATTCTG
AAGAAATATTAACTCCCGGGATTTCCATTGGCTGGATAACCCCTTCCATA
CTGTGAAAAGAAAGCATATCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAAGTGGGAAGGCAGGCCTTTCCCGG
CGACTCTAGACTGATGCTATTGCTATAATGCAAACACCGACTTTTGGATA
AATGAGTTACTCTGGAATTATGAAGATGAAATAAGCATTTTCTAAGAACC
TTCCTTTTTCTTCACTGAGCATCTTTCATATTGTCCCAGAAACAGCAACA
CCTATGACTCTGTCCTCACAGACACATACATGCATATTTGTGTTCTGTGT
GTGCATGCATGTGTAGGCTATATGTGAGTGCATGCATATGTGTGCTGTAT
GTGTGCATGCATGTTGTGAGTTATATATAAGTGCAGGCAATGTGTTACAT
ATGTGTGTGTGTTGTATGTGTGCATGCACATGTGTGCTCCACACACATGC
CAGCATGTGTGTTGTGTTTGTATACATGTATGTTATGTGCGAGTATAAGT
ATTCATTGTATGAATCCACATGTGCATTCTTGTGTTGTGTGCACATTTGA
GAAAGTCTGCATGCGGCATATGTATGCCCGTTAAACTTGTGTTACATGCT
TGCGTTGATGTACCCGAATGCTTAAGGCTGCCCCTTCTCTAATCTCTCCT
AAAAATCCTGCGATCTTTGATAACACCTGTGTCCTCCGGCTAACTCCTGC
TGTATAGTACATTCATTTAATCTCATTTTTTATACTATTACGTTTACTCC
TATTTTTTAGTTGTAAGCATATTTGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_f20.b1 MSMg01no418_f20.b1 CHROMAT_FILE:
MSMg01no418_f20.b1 PHD_FILE: MSMg01no418_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:32 2005
         (476 letters)



>mm_chr1_194719792_194720667
          Length = 876

 Score =  824 bits (426), Expect = 0.0
 Identities = 429/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacattgctagttgttcttcacaggttctttttcttactttctttataatccaagattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cacattgctagttgttcttcacaggttctttttcttactttctttataatccaagattct 371

                                                                       
Query: 61  tctcttcatctgtcaattgcatgtggccatcggtatcattgttgccagccaatgatacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctcttcatctgtcaattgcatgtggccatcggtatcattgttgccagccaatgatacta 311

                                                                       
Query: 121 aaacaagatgaggcatgtggtaaagcaccttaaagccacaggctgtgctctctacactga 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 310 aaacaagatgaggcatgtggtaaagcaccttaaagccacaggctgtgccctctacactga 251

                                                                       
Query: 181 cagtactgatgatggttacagccataacttagtaaagagctaacacaagaatgtactgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cagtactgatgatggttacagccataacttagtaaagagctaacacaagaatgtactgtc 191

                                                                       
Query: 241 ttatttgactcacaaaatatgaagaggcaagtaacatcatcagtgttttattcatgagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttatttgactcacaaaatatgaagaggcaagtaacatcatcagtgttttattcatgagga 131

                                                                       
Query: 301 agttgctgcatggagaagctgagctgaccccctaaggctgccccctcttaagaaaaccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 agttgctgcatggagaagctgagctgaccccctaaggctgccccctcttaagaaaaccca 71

                                                                       
Query: 361 gtagaactgggattgctccaaacccactcatgcgcattgtatcttaacccagtttattac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  gtagaactgggattgctccaaacccactcatgcgcattgtatcttaacccagtttattac 11

                     
Query: 421 gggtgagagg 430
           ||||||||||
Sbjct: 10  gggtgagagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no418_f20.g1 MSMg01no418_f20.g1 CHROMAT_FILE:
MSMg01no418_f20.g1 PHD_FILE: MSMg01no418_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:32 2005
         (397 letters)



>mm_chr1_194549728_194550524
          Length = 797

 Score =  760 bits (393), Expect = 0.0
 Identities = 396/397 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaagtgggaaggcaggcctttcccggcgactctagactgatgctattgctataatgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaagtgggaaggcaggcctttcccggcgactctagactgatgctattgctataatgcaa 260

                                                                       
Query: 61  acaccgacttttggataaatgagttactctggaattatgaagatgaaataagcattttct 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 acaccgacttttggataaatgagtaactctggaattatgaagatgaaataagcattttct 320

                                                                       
Query: 121 aagaaccttcctttttcttcactgagcatctttcatattgtcccagaaacagcaacacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaccttcctttttcttcactgagcatctttcatattgtcccagaaacagcaacacct 380

                                                                       
Query: 181 atgactctgtcctcacagacacatacatgcatatttgtgttctgtgtgtgcatgcatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgactctgtcctcacagacacatacatgcatatttgtgttctgtgtgtgcatgcatgtg 440

                                                                       
Query: 241 taggctatatgtgagtgcatgcatatgtgtgctgtatgtgtgcatgcatgttgtgagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggctatatgtgagtgcatgcatatgtgtgctgtatgtgtgcatgcatgttgtgagtta 500

                                                                       
Query: 301 tatataagtgcaggcaatgtgttacatatgtgtgtgtgttgtatgtgtgcatgcacatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatataagtgcaggcaatgtgttacatatgtgtgtgtgttgtatgtgtgcatgcacatgt 560

                                                
Query: 361 gtgctccacacacatgccagcatgtgtgttgtgtttg 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgctccacacacatgccagcatgtgtgttgtgtttg 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)