BAC Information

Click to search

BAC

Clone NameMSMg01-418H15
Chromosome1 (Build37)
Map Location 162,113,257 - 162,113,803
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664972, Rfwd2, EG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn
Downstream geneMrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418H15.T7 (MSMg01no418_h15.b1)MSMg01-418H15.TJ (MSMg01no418_h15.g1)
ACCAG513804AG513805
length749842
length of high quality
(start - end)		553 (46 - 598)96 (88 - 183)
definitionCHROMAT_FILE: MSMg01no418_h15.b1 PHD_FILE: MSMg01no418_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:41 2005CHROMAT_FILE: MSMg01no418_h15.g1 PHD_FILE: MSMg01no418_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCGGTCTCACCTCCTACTCTAGCTGCTGTTGGGCTGACAAGTCC
TAAGCAGGCAATTTCTAGTTTAGTTCACTTGTATTAAAAGGCACCATGTA
TTTTACATCAGGTACCTCTCAATTCTTGTCCGTGGATTTCTCTGATGCTG
GCTTGGATATCCTGTGAGCCAGAAGCCTGTTTGTCATGCACAGCTTCCCA
TGTCTGGTGAACTGACACCGGGGAAATACCATAAAATGGGGTATGGGGCG
CCTGGGAAGGCCTCAAAAAGGTGCTGAGCAATGGTGACCTGCAGTGGCTA
ACTTGATACTAATGTCATCTTGGTATGGGTTCTCCATTCTTTCTCCCCTC
CCCCGCCCCGCCCCCCACTGTCCTCATCGCTTATTTTGTTCTTCACAAAT
TACTTGCAAACAAACTTTTATTTTGGATTCCACTTTGGGGAGTGGAGAGG
GAAATGTAGGTGAGAATTTAGAATATCCCATCCAAACGATGGCCCTCATC
CCATTGATTGTGCTGCGACTCTTTCATATCTTTTGTTCCTATTCTTNGGC
CTGAGTTCAGAAAGACTTCACCTCTCGTCTGTGCTACAGTTAACTAGATT
TGACACTTCTCTTTTATCCTTGCCTTTGTACCTCTCTATGGATTTGGTTT
CATTTTTGAGACAGGACCTTTGTAATCCCTGATGTCCTCAACTCTCCTT

TGACAGACCCTAGTGCCGATGATGTGGTAGGCCTGGGGGCGCCTGTTTCT
CACTATAGGGTGACCTATAGAAGTTTCGACAAATTCAGTACAGTTTCCTT
TGCTGGGAGATATCAGTAAGCACCACGGAGCGGCTGCTTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGNNNCCCCTCCTTCT
TCCTTCCTCTTCTCTCTCCCTCCTCTTTCCTCTTTTTCCTTTTTCTCCCC
CCCCCCCTCCTCCTCTTTTTTTTTCTTTCCTCCTTCCTCTTCCCCCCTCT
TCTCCCTTTTTCTCCCCTTTCTCCGTCCCCCTCCCCTTTTCCTGCTTTTC
CCCCGNCCCCCCCCCCGCCGCNCCCCCCCCTTTTTTCCTCCCCCCCTCCT
CCTCTTCTTTTTTTTTCCTTCCTTCCCTTTCCTCCTCCTTCCTTCCCTCT
CCTCTCTTCCTTTCCCTTGTCTTTCTCTTCTTTCCTTCTTTTCCCCCCCT
CTTTTACCCTCTTCTTCTATTTCCTCCTTTCCTCTTTTTCCCCCCCTTTT
TTCCTCCCTTCCCTTCCATCCTTTTACCTCCCTCTTCTTCCTCTCTTTCT
TTCCTTTCTCCTCTCCCCTCTCCCTTTATCCTCCTTTCCTTTTCTCTTCC
TTTCTTAAACATTTTCCCCCCTTCCCTTCCCTTTCCCCCCTCCCTTTTTT
CCTTTTCCCTCTCCCCTTCTTTTTTTTTTTTTTTTTCTCCCCCCACCCCC
ATCCTTTTTATCCCTTCCCTTCCCTTTCTCCTTTATCCTTCCTCCTATCT
TCTCCCTTCCTCCCTTTCCCTTTTTCTTTCTTCACTCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_h15.b1 MSMg01no418_h15.b1 CHROMAT_FILE:
MSMg01no418_h15.b1 PHD_FILE: MSMg01no418_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:41 2005
         (553 letters)



>mm_chr1_162113053_162114005
          Length = 953

 Score = 1011 bits (523), Expect = 0.0
 Identities = 541/547 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccggtctcacctcctactctagctgctgttgggctgacaagtcctaagcaggc 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 751 gaattctccggtctcacctcctactctagctgctgttgggctgacaagacctaagcaggc 692

                                                                       
Query: 65  aatttctagtttagttcacttgtattaaaaggcaccatgtattttacatcaggtacctct 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 691 aatttctagtttagttcacttgtattaaaaggcaccatatattttacatcaggtacctct 632

                                                                       
Query: 125 caattcttgtccgtggatttctctgatgctggcttggatatcctgtgagccagaagcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 caattcttgtccgtggatttctctgatgctggcttggatatcctgtgagccagaagcctg 572

                                                                       
Query: 185 tttgtcatgcacagcttcccatgtctggtgaactgacaccggggaaataccataaaatgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tttgtcatgcacagcttcccatgtctggtgaactgacaccggggaaataccataaaatgg 512

                                                                       
Query: 245 ggtatggggcgcctgggaaggcctcaaaaaggtgctgagcaatggtgacctgcagtggct 304
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 511 ggtatggggcgcctgggaaggcctcaaataggtgctgagcaatggtgacctgaagtggct 452

                                                                       
Query: 305 aacttgatactaatgtcatcttggtatgggttctccattctttctcccctcccccgcccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aacttgatactaatgtcatcttggtatgggttctccattctttctcccctcccccgcccc 392

                                                                       
Query: 365 gccccccactgtcctcatcgcttattttgttcttcacaaattacttgcaaacaaactttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gccccccactgtcctcatcgcttattttgttcttcacaaattacttgcaaacaaactttt 332

                                                                       
Query: 425 attttggattccactttggggagtggagagggaaatgtaggtgagaatttagaatatccc 484
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 331 attttggatcccactttggggagtggagagggaaacgtaggtgagaatttagaatatccc 272

                                                                       
Query: 485 atccaaacgatggccctcatcccattgattgtgctgcgactctttcatatcttttgttcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atccaaacgatggccctcatcccattgattgtgctgcgactctttcatatcttttgttcc 212

                  
Query: 545 tattctt 551
           |||||||
Sbjct: 211 tattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |