BAC Information

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BAC

Clone NameMSMg01-418M08
Chromosome1 (Build37)
Map Location 25,007,009 - 25,190,214
singlet/doubletdoublet
Overlap gene4930472D16Rik, LOC669171, Bai3
Upstream gene1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
Downstream geneLOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418M08.T7 (MSMg01no418_m08.b1)MSMg01-418M08.TJ (MSMg01no418_m08.g1)
ACCAG514028AG514029
length750729
length of high quality
(start - end)
476 (51 - 526)394 (59 - 452)
definitionCHROMAT_FILE: MSMg01no418_m08.b1 PHD_FILE: MSMg01no418_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:03 2005CHROMAT_FILE: MSMg01no418_m08.g1 PHD_FILE: MSMg01no418_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,007,009 - 25,007,482)(25,189,821 - 25,190,214)
sequence
GGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCGGAGAGGAGCC
GCGGAATTCTGAGGATCCCCTATGCCTTTGTTGAAGGTCACAGGGCCTAG
TGTCCTTATGTGCAAATGTAATGCAGATGGGCATTGGAAATGAGTAGTCT
TATTTAATTTTAATTTACTTTACATTTTATTGCAATATCTGCCATGGAAG
TCATTCTAAAGGTGATTTTGAAAATATGACCAAACCAAAAATAGAGACCA
TTATTATAAAGGCTAGCACATTTGCAAAGAGGTCAAAAGCTCTTTCGAAG
AATTAATTAAAATTTGTGGCTCTCTGTTTAAGTAAATAAATATTGTTTCT
CTTATGGAATAGTAATCTTGACCTATTAAAGTATTATGTTGGTATGAACT
TTAGCTAAGAGTCAAATGGTAGGCCATTATGTAGAATGCTTAGAAAACTC
AAGATTCTCCATTGTGTTCTCTAGTAAAGTTCCCATATACCTAAATTTTC
TGAGTGTTAATAAGTGAAAAAACAATAAATATCAAATAAAGAAAACATGA
ACAAAGCAATTTAAAAAAAAAAACAAATGAAGTTTAGAGCTATGAGTTTA
ATCTTTATCTATTGCTGTGTGTGTGCGCGTGCGTGTTGCGTCCTTCCGCC
TTCCTTAGTTCAATTCTCCTACACCCTCTTAATCCTTCCCTGTTTTCCTT
TTCCTCCCCCCTTTCTCTTTTTACACTTCTCCCTCCCTATTCTTACTATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXGTCAAGAGCAGAGCTGCCTGTGGCAAAGCAGGTTAAACAAATTTTG
ATGATGAACTTGAAGTGCCAATGAGTCTTACATTTGGAATAGTGATATAT
CAGGACATGACTATCAGGAGAGTTAAGAGTGGACTAAATGGTGCAGACAA
AGGGGCTCTGTGGCCTGAAGTGGTGCTGGGTCAGGTGTGCACAATGACTG
AAAAGATATCAAGATGAATCTCTGAGATAGAGTTTGATCCTTATCAGTGG
TATATGCCCTGATACTGAGGAGAGTTAGAGAATGCTTGATCTTTAGGAGT
TGCTGATGTGAAGTGTGTAGTATATAGGAAAAGAAAGCAATGAGTCCTGA
TCCTCATATCTCAAAATAATCATGCCTGGGAAACTGATAACATTTATGGG
AAAAAATGGCAGTCACTTGAAAATTGCTATTGATGAGAGTTGTCATGTAT
AAGTTATATTATTCCAACTTGGCACATATAATACATAAACTCCAGTGTTC
GTTTTATCCTATGCTTAAGAACTCAGGAACAGCCCGCTTCTCCTGAGGAG
TGGTTGCCTTTTCCAGTGATTATTGGCCGCCCTTGAAAAGCCTCTTTAAC
ATAAAAGCCCACTATTTTAGACTTTTAACCTTTTATCATAAAAACTTCTT
GGTTAAATACTTATCTTATATCCGATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_m08.b1 MSMg01no418_m08.b1 CHROMAT_FILE:
MSMg01no418_m08.b1 PHD_FILE: MSMg01no418_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:03 2005
         (476 letters)



>mm_chr1_25006807_25007682
          Length = 876

 Score =  870 bits (450), Expect = 0.0
 Identities = 468/474 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattctgaggatcccctatgcctttgttgaaggtcacagggcctagtgtccttatgtg 62
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctgaggatccgttatgcctttgttgaaggtcacagggcctagtgtccttatgtg 262

                                                                       
Query: 63  caaatgtaatgcagatgggcattggaaatgagtagtcttatttaattttaatttacttta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caaatgtaatgcagatgggcattggaaatgagtagtcttatttaattttaatttacttta 322

                                                                       
Query: 123 cattttattgcaatatctgccatggaagtcattctaaaggtgattttgaaaatatgacca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cattttattgcaatatctgccatggaagtcattctaaaggtgattttgaaaatatgacca 382

                                                                       
Query: 183 aaccaaaaatagagaccattattataaaggctagcacatttgcaaagaggtcaaaagctc 242
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 383 aaccaaaaatagagaccattattataaaggctagcacatttgcaaggaggtcaaaagctc 442

                                                                       
Query: 243 tttcgaagaattaattaaaatttgtggctctctgtttaagtaaataaatattgtttctct 302
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 443 tttcgaagaattaattaaaatttgtggctctctggagaagtaaataaatattgtttctct 502

                                                                       
Query: 303 tatggaatagtaatcttgacctattaaagtattatgttggtatgaactttagctaagagt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tatggaatagtaatcttgacctattaaagtattatgttggtatgaactttagctaagagt 562

                                                                       
Query: 363 caaatggtaggccattatgtagaatgcttagaaaactcaagattctccattgtgttctct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caaatggtaggccattatgtagaatgcttagaaaactcaagattctccattgtgttctct 622

                                                                 
Query: 423 agtaaagttcccatatacctaaattttctgagtgttaataagtgaaaaaacaat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agtaaagttcccatatacctaaattttctgagtgttaataagtgaaaaaacaat 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no418_m08.g1 MSMg01no418_m08.g1 CHROMAT_FILE:
MSMg01no418_m08.g1 PHD_FILE: MSMg01no418_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:04 2005
         (394 letters)



>mm_chr1_25189621_25190414
          Length = 794

 Score =  708 bits (366), Expect = 0.0
 Identities = 387/394 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagcagagctgcctgtggcaaagcaggttaaacaaattttgatgatgaacttgaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agagcagagctgcctgtggcaaagcaggttaaacaaattttgatgatgaacttgaagtgc 535

                                                                       
Query: 61  caatgagtcttacatttggaatagtgatatatcaggacatgactatcaggagagttaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 caatgagtcttacatttggaatagtgatatatcaggacatgactatcaggagagttaaga 475

                                                                       
Query: 121 gtggactaaatggtgcagacaaaggggctctgtggcctgaagtggtgctgggtcaggtgt 180
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 474 gtggactaaatggtgctgacaaaggggctctgtggcctgaaatggtgctgggtcaggtgt 415

                                                                       
Query: 181 gcacaatgactgaaaagatatcaagatgaatctctgagatagagtttgatccttatcagt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 414 gcacaatgactgaaaagatatcaagatgcatctctgagatagagtttgatccttatcagt 355

                                                                       
Query: 241 ggtatatgccctgatactgaggagagttagagaatgcttgatctttaggagttgctgatg 300
           || | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gggaaacgccctgatactgaggagagttagagaatgcttgatctttaggagttgctgatg 295

                                                                       
Query: 301 tgaagtgtgtagtatataggaaaagaaagcaatgagtcctgatcctcatatctcaaaata 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 294 tgaagtgtgtagtatataggaaaagaaagcaatgagtcctgatcctcacatctcaaaata 235

                                             
Query: 361 atcatgcctgggaaactgataacatttatgggaa 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 atcatgcctgggaaactgataacatttatgggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)