BAC Information

Click to search

BAC

Clone NameMSMg01-418O01
Chromosome1 (Build37)
Map Location 112,754,276 - 112,754,462
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh7, LOC100041429, EG626652
Downstream geneCdh19, EG666578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418O01.T7 (MSMg01no418_o01.b1)MSMg01-418O01.TJ (MSMg01no418_o01.g1)
ACCAG514110AG514111
length745824
length of high quality
(start - end)
190 (52 - 241)507 (155 - 661)
definitionCHROMAT_FILE: MSMg01no418_o01.b1 PHD_FILE: MSMg01no418_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:11 2005CHROMAT_FILE: MSMg01no418_o01.g1 PHD_FILE: MSMg01no418_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGAGATTGCTGGACTCTTCTACAGTTGAGATTCTAGCT
GATTTTGACTAGCTTTTGTAGTGTCTGTATTTTTTTTTTTTCTGTTTTAG
TGGTAGACTAGTTGGTGATCTATCAGCAGAGCCTCTCCTACATAATGTTG
AAGAGTTAGACTCTGCTGTATCCTGCCTAAGGACAGCTTGGGGGCAGNAC
TGGAACTGTCTTTGTTAACATGTTTTAATTTCTTTATTAGGAGCATCTTC
TTTTTTATAGCCTGTCTCTAAAGTTGGTTGAATGCTAAATTGTGCTCCCC
TGGTTGCAAAAAGAATATCTTTTATGAAATATATTTTATGGGCTTATTAT
TTAANCCTACAAATTAGCCCTTTAAAGGTTCCTTAATTTGAAAAGCCCTG
AGAACCTTTTTTCGTGTAAACCCCCCCTTNAATTGTTGGTTTTCTGGAGA
GCAGGGGCCCTTTTCCAAGGAGTTTTGGGGAACCCCCTTTAAATTGGGTA
ACATCTTTTGTTTACAAAATTTGGGGAATATAAATAGAAATAAACGGCCC
CCCCCAACTCCCCCAATTTTCTTCACTCCCTTTTTCTTTTCTTTTTTAAA
AAAAATAATCTTCTTTTCTGTTTTTTTTTGGGTCTCCTCCCCCCCTCCCC
TATTACAAATATACTCCTTCGGTCCCCTATTATATCTTTTTTTGG
GGGAGGTAGAGGGAGGTGGAGAGGAGAGAGGGGAGGAGAGGGGAGAGGGA
GGTGGAGNNNGNNNNGGTGTCGGAGTGCACAATGATAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACGAAATTCTTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACCCAATCACAAAAGAACTCAAATGAAATGTACTCACTGATA
AGGGGATACTAACCCAGAAACTTAGTATAGGGAGATATAAGGTACAATAT
GCAAAACATGAAACTGAAGAAGAACGAAGACCAAAGTGTGGACACTTTGC
TCCTTCTTAGAATTGGAAACAATCACCCATGGAAGGAGTTACAGAGACAA
AGTTTGGAGCTGAGACAAAAGGATGGTACATCTAGAGACTGGCATATCCA
GGGATCCATCCCATAATTAGCCTCCAAGTGATGACACCATTGCATACACT
AGCAAGCCTTTGTTGCAAGGACGGTGATATAGCTGTCCCTTGTGAGACTA
GGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAACTATTGGA
TAGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCCAGGAGCT
AAAGAGATCTGCAACCCTATTGGAGGAACAACTTTATGAACTAACCAGTA
CCCCAGAGCTCTTGACTCTAGCTGTATATGCATCAAAAGATGACCTTATC
AGCCATCACTGGATAGAGAGGCCCATTGTTCACGCAAACGTTATATGCCC
CAGTTATATCCCCAAGGGAAAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_o01.b1 MSMg01no418_o01.b1 CHROMAT_FILE:
MSMg01no418_o01.b1 PHD_FILE: MSMg01no418_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:11 2005
         (190 letters)



>mm_chr1_112753987_112754576
          Length = 590

 Score =  331 bits (171), Expect = 2e-95
 Identities = 183/187 (97%), Gaps = 1/187 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagagattgctggactcttctacagttgagattctagctgattttgactagctt 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaattccagagactgatggactcttctacagttgagattctagctgattttgactagctt 417

                                                                       
Query: 65  ttgtagtgtctgta-ttttttttttttctgttttagtggtagactagttggtgatctatc 123
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 416 ttgtagtgtctgtatttttttttttttctgttttagtggtagactagctggtgatctatc 357

                                                                       
Query: 124 agcagagcctctcctacataatgttgaagagttagactctgctgtatcctgcctaaggac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agcagagcctctcctacataatgttgaagagttagactctgctgtatcctgcctaaggac 297

                  
Query: 184 agcttgg 190
           |||||||
Sbjct: 296 agcttgg 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)