BAC Information

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BAC

Clone NameMSMg01-418P12
Chromosome1 (Build37)
Map Location 177,539,350 - 177,539,925
singlet/doubletsinglet
Overlap geneFh1
Upstream geneFmn2, Grem2, Rgs7
Downstream geneKmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418P12.T7 (MSMg01no418_p12.b1)MSMg01-418P12.TJ (MSMg01no418_p12.g1)
ACCAG514180AG514181
length752735
length of high quality
(start - end)
109 (194 - 302)550 (79 - 628)
definitionCHROMAT_FILE: MSMg01no418_p12.b1 PHD_FILE: MSMg01no418_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:19 2005CHROMAT_FILE: MSMg01no418_p12.g1 PHD_FILE: MSMg01no418_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGTCTATAATTTGGGGCGCTAAACGACTACTATTGCGTATGGAGGCGCG
GAATTCCCAGTCTTACCTGACAGATCTCAACTGTCTGAAACTCCAGTTTC
TAAGAATCAATCTCTCTTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTGTGGGGGTCTCTCACACACACACACACACA
CACAGAGGGCGGGGGAAGAGGGAAAGAGAGAGAGAGGCAAAACACCAACA
CATATAAAATTAATTAATTTATGTAAAAAAGAACAGTCAGAGAAATTCAT
AGGGTGTACATCGAGCTCATGTTTTTTTTTGNAGAGACCNTGAATAACAT
ACCCAAGGATGTGATAAGAATCTATTCAGAAGAAGCATTTTGTGTTGTTT
TACTTTGTTTTTTCTGCGAGACATACTATATATAATCCAGGCTATCCCTA
AATTTATGATCCTCCTGACTTAGACTCTTGAGTGATGGGAGTCTAGAAGG
GAATCTATCGCGCGTGTTGGTCATGTTGAAAATATTTGATACATAGTAAG
GGACTGTATCCAGGGTCGTGCCTTTGACTCTAATTAAGCAACATTTAAGA
AATGATACAGGATTCTAGAAAGATCTAGATCTCCAAATGGAAAAAGAAGA
AAAGGACCTATGGGTTGTTTTAAGAATGGGAGAGCGTAAAAGAGAAATAG
AGGGTAAAAAAAGGGAAACGTGTGGGAGTAGGAGGAGAAATAAAAGGAAA
GN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCCGCACACATCAGTGGTTACGTTCAGCAAGTCCAG
TATGCGATGGTGAGAATAANAGCCGCCATGCCAAGAATCTACGAGCTCGC
TGCTGGAGGCACTGCTGTGGGGACGGGGTTAAACACCAGGATCGGCTTCG
CAGAANAGGTGGCCGCAAAAGTAGCAGCACTCACAGGTTGGGGACCACAC
GCATTGCTACTCACGTTCTTCACATAGCTTATGCATCTTGTAGATATTTC
TAGGCTGAATTCTTCTGAAATTGTTTAGTAACATGTTCCCATCAAACATG
GCTTGTGTCCATGTCAGAAGTTAAAAACGTTTATCTTACTTTTAAAGGCT
TCCATATAAGATTCATAGGCATGCGTTTACATGTTTTGTTTGCTGTCTGG
TAGCATTCAGTCCTTTCTCTTCAAAGCTATGTTAAGTATTTTTCGAAGAA
AGCAGAAACAGTTGACCATTGAGAAACTTATCACATGATAAGTGCACTGA
TGTTCTTTGCCGTAACTTCTTTAAATACCATCCCCACACTAGTACAGTAT
TGTTATTGTTATTAGAACCAGCTTGTCATTGCCAGAAAACTGATTAAGAT
GCTGATGCTACCCTAAGGTTAGGGCAGTAATAAGTATAGAATACATATCA
CCAGTATATTCCGTTTTTAACATTTGTATATATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_p12.g1 MSMg01no418_p12.g1 CHROMAT_FILE:
MSMg01no418_p12.g1 PHD_FILE: MSMg01no418_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:19 2005
         (550 letters)



>mm_chr1_177539253_177540202
          Length = 950

 Score =  797 bits (412), Expect = 0.0
 Identities = 526/584 (90%), Gaps = 42/584 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggttacgttcagcaagtccagtatgcgatggtgagaataanagccgccatgccaagaat 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 673 tggttacgttcagcaagtccagtatgcgatggtgagaataaaagccgccatgccaagaat 614

                                                                       
Query: 61  ctacgagctcgctgctggaggcactgctgtggggacggggttaaacaccaggatcggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 613 ctacgagctcgctgctggaggcactgctgtggggacggggttaaacaccaggatcggttt 554

                                                                       
Query: 121 cgcagaanaggtggccgcaaaagtagcagcactcacaggttggggaccacacgcattgct 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 553 cgcagaaaaggtggccgcaaaagtagcagcactcacaggttggggaccacatgcattgct 494

                                                                       
Query: 181 actcacgttcttcacatagcttatgcatcttgtagatatttctaggctgaattcttctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 actcacgttcttcacatagcttatgcatcttgtagatatttctaggctgaattcttctga 434

                                                                       
Query: 241 aatt---gtttagtaacatgttcccatcaaacatggcttgtgtccatgtcagaagttaa- 296
           ||||   |   |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 433 aattaagg---agtaacatgttcccatcaaacatggcttgtgtccatgtcagaagttaat 377

                                                                       
Query: 297 aaacgtttatcttacttttaaaggcttccatataaga-ttcatagg--catgcgtttaca 353
           ||| ||||||||||||||| ||||||||||||||||| |||||  |  ||||||||||||
Sbjct: 376 aaa-gtttatcttactttt-aaggcttccatataagagttcat--gttcatgcgtttaca 321

                                                                       
Query: 354 tgttttgtttgctgtctggtagcattcagtcctttctcttcaaagctatgttaagtattt 413
           ||||||||||| |||||| ||||||| ||||||||| |||||||||| ||||||||||||
Sbjct: 320 tgttttgtttgttgtctgctagcatttagtcctttcccttcaaagctgtgttaagtattt 261

                                                                       
Query: 414 ttcgaagaaagcagaaacagttgaccattgagaaacttatcacatgataagtgcactga- 472
           ||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||| 
Sbjct: 260 ttcaaagaaagcagaaacagttgactgttgagaaacttatcacatgataagtgcactgat 201

                                                                       
Query: 473 ---------------tg------ttctttgccgtaact-tctttaaataccat----ccc 506
                          ||      |||||||| |||| | ||||||||||| ||    |||
Sbjct: 200 agcttggtttttgcgtgtcatatttctttgctgtaa-tatctttaaatactatccccccc 142

                                                       
Query: 507 cacactagtacagtattgttattgttattagaaccagcttgtca 550
           | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 cccgctagtacagtattgttattgttattagaaccagcttgtca 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)