MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-419D20
Chromosome	1 (Build37)
Map Location	38,536,143 - 38,536,474
singlet/doublet	singlet
Overlap gene	Aff3
Upstream gene	Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123
Downstream gene	Lonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8
Link	Open Mouse BAC browser

Click to get alignment info.

name	Mgat4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269181 MGI:2662992
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2010300C02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72097 MGI:1919347
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 51 ESTs, 2 Proteins

name	Tsga10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211484 MGI:2685063
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG623661 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:623661 MGI:3645211
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mitd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69028 MGI:1916278
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrpl30 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107734 MGI:1333820
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm776 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:332427 MGI:2685622
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2300002O18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69541 MGI:1916791
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Txndc9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98258 MGI:2138153
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666434 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666434 MGI:3649002
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs

name	Eif5b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226982 MGI:2441772
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rev1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56210 MGI:1929074
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG329123 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329123 MGI:3644917
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Aff3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16764 MGI:106927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 99 ESTs, 2 Proteins

name	Lonrf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381338 MGI:1920209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chst10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98388 MGI:2138283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625775 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625775 MGI:3647848
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 13 Proteins pseudo : _no_value

name	Nms (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433292 MGI:3583618
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdcl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68833 MGI:1916083
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Npas2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18143 MGI:109232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041999 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041999
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 ESTs, 2 Proteins

name	Rpl31 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114641 MGI:2149632
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbc1d8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54610 MGI:1927225
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mgat4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33239361 GeneID:269181 MGI:2662992
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mannoside acetylglucosaminyltransferase 4, isoenzyme A transcript_id : NM_173870.1

name	2010300C02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149233817 GeneID:72097 MGI:1919347
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 51 ESTs, 2 Proteins product : RIKEN cDNA 2010300C02 gene transcript_id : XM_129808.8

name	Tsga10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131026 GeneID:211484 MGI:2685063
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : testis specific 10 transcript_id : NM_207228.2

name	EG623661 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802644 GeneID:623661 MGI:3645211
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG623661 transcript_id : NM_001037918.2

name	Mitd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802096 GeneID:69028 MGI:1916278
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MIT, microtubule interacting and transport, domain containing 1 transcript_id : NM_026913.2

name	Mrpl30 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384716 GeneID:107734 MGI:1333820
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L30 transcript_id : NM_027098.2

name	Gm776 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370361 GeneID:332427 MGI:2685622
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 776, (NCBI) transcript_id : NM_001033427.2

name	2300002O18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802162 GeneID:69541 MGI:1916791
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2300002O18 gene transcript_id : NM_027111.3

name	Txndc9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802781 GeneID:98258 MGI:2138153
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin domain containing 9 transcript_id : NM_172054.4

name	EG666434 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363313 GeneID:666434 MGI:3649002
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs product : predicted gene, EG666434 transcript_id : XM_983830.1

name	Eif5b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84043960 GeneID:226982 MGI:2441772
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation initiation factor 5B transcript_id : NM_198303.2

name	Rev1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50811869 GeneID:56210 MGI:1929074
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : REV1 homolog (S. cerevisiae) transcript_id : NM_019570.3

name	EG329123 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363315 GeneID:329123 MGI:3644917
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG329123 transcript_id : XM_286973.3

name	Aff3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149233821 GeneID:16764 MGI:106927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 99 ESTs, 2 Proteins product : AF4/FMR2 family, member 3 transcript_id : XM_001477293.1

name	Lonrf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71274157 GeneID:381338 MGI:1920209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LON peptidase N-terminal domain and ring finger 2 transcript_id : NM_001029878.1

name	Chst10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70908367 GeneID:98388 MGI:2138283
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbohydrate sulfotransferase 10 transcript_id : NM_145142.2

name	Nms (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58652150 GeneID:433292 MGI:3583618
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuromedin S transcript_id : NM_001011684.1

name	Pdcl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382228 GeneID:68833 MGI:1916083
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosducin-like 3 transcript_id : NM_026850.3

name	Npas2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679101 GeneID:18143 MGI:109232
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuronal PAS domain protein 2 transcript_id : NM_008719.1

name	LOC100041999 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233827 GeneID:100041999
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 ESTs, 2 Proteins product : similar to Ribosomal protein L17 transcript_id : XM_001477395.1

name	Rpl31 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347404 GeneID:114641 MGI:2149632
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L31 transcript_id : NM_053257.2

name	Tbc1d8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379940 GeneID:54610 MGI:1927225
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TBC1 domain family, member 8 transcript_id : NM_018775.3

name	Mgat4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33239362 CCDS:CCDS14893.1 GeneID:269181 MGI:2662992
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA] codon_start : 1 note : N-acetylglucosaminyltransferase IVa product : mannoside acetylglucosaminyltransferase 4, isoenzyme A protein_id : NP_776295.1

name	2010300C02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149233818 GeneID:72097 MGI:1919347
definition	codon_start : 1 product : hypothetical protein LOC72097 protein_id : XP_129808.7

name	Tsga10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402207 CCDS:CCDS14894.1 GeneID:211484 MGI:2685063
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] [Evidence IDA]; GO:0009434 - flagellum (sensu Eukaryota) [Evidence IDA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0005198 - structural molecule activity [Evidence ISS] GO_process : GO:0030031 - cell projection biogenesis [Evidence IMP] codon_start : 1 product : testis specific 10 protein_id : NP_997111.1

name	EG623661 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702310 CCDS:CCDS14895.1 GeneID:623661 MGI:3645211
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC623661 protein_id : NP_001033007.1

name	Mitd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625710 GeneID:69028 MGI:1916278
definition	codon_start : 1 product : MIT, microtubule interacting and transport, domain containing 1 protein_id : NP_081189.1

name	Mrpl30 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312302 CCDS:CCDS14896.1 GeneID:107734 MGI:1333820
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005761 - mitochondrial ribosome [Evidence IEA] [Evidence ISS]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0007046 - ribosome biogenesis [Evidence IEA] codon_start : 1 product : mitochondrial ribosomal protein L30 protein_id : NP_081374.1

name	Gm776 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701937 CCDS:CCDS14897.1 GeneID:332427 MGI:2685622
definition	GO_function : GO:0003796 - lysozyme activity [Evidence IEA] GO_process : GO:0016998 - cell wall catabolism [Evidence IEA]; GO:0009253 - peptidoglycan catabolism [Evidence IEA] codon_start : 1 product : hypothetical protein LOC332427 protein_id : NP_001028599.1

name	2300002O18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113931148 GeneID:69541 MGI:1916791
definition	GO_function : GO:0003796 - lysozyme activity [Evidence IEA] GO_process : GO:0016998 - cell wall catabolism [Evidence IEA]; GO:0009253 - peptidoglycan catabolism [Evidence IEA] codon_start : 1 product : hypothetical protein LOC69541 protein_id : NP_081387.1

name	Txndc9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:25286717 CCDS:CCDS14898.1 GeneID:98258 MGI:2138153
definition	codon_start : 1 product : ATP binding protein associated with cell differentiation protein_id : NP_742051.1

name	EG666434 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94363314 GeneID:666434 MGI:3649002
definition	codon_start : 1 product : hypothetical protein protein_id : XP_988924.1

name	Eif5b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84043961 GeneID:226982 MGI:2441772
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003743 - translation initiation factor activity [Evidence IEA] codon_start : 1 product : eukaryotic translation initiation factor 5B protein_id : NP_938045.2

name	Rev1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254551 CCDS:CCDS14899.1 GeneID:56210 MGI:1929074
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0017125 - deoxycytidyl transferase activity [Evidence IDA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006260 - DNA replication [Evidence IEA]; GO:0042276 - error-prone postreplication DNA repair [Evidence ISS] [Evidence IDA]; GO:0006280 - mutagenesis [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : REV1-like protein_id : NP_062516.2

name	EG329123 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94363316 GeneID:329123 MGI:3644917
definition	codon_start : 1 product : hypothetical protein protein_id : XP_286973.2

name	Aff3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149233822 GeneID:16764 MGI:106927
definition	codon_start : 1 product : similar to AF4/FMR2 family member 3 (Protein LAF-4) (Lymphoid nuclear protein related to AF4) protein_id : XP_001477343.1

name	Lonrf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71274158 CCDS:CCDS14900.1 GeneID:381338 MGI:1920209
definition	GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA] codon_start : 1 product : LON peptidase N-terminal domain and ring finger 2 protein_id : NP_001025049.1

name	Chst10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70908368 CCDS:CCDS14901.1 GeneID:98388 MGI:2138283
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008146 - sulfotransferase activity [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0007612 - learning [Evidence IMP]; GO:0007616 - long-term memory [Evidence IMP] codon_start : 1 note : HNK-1 sulfotransferase product : carbohydrate sulfotransferase 10 protein_id : NP_660124.2

name	Nms (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58652151 CCDS:CCDS14902.1 GeneID:433292 MGI:3583618
definition	GO_function : GO:0001664 - G-protein-coupled receptor binding [Evidence ISS] GO_process : GO:0045475 - locomotor rhythm [Evidence ISS]; GO:0007218 - neuropeptide signaling pathway [Evidence ISS]; GO:0006940 - regulation of smooth muscle contraction [Evidence IEA] codon_start : 1 product : neuromedin S protein_id : NP_001011684.1

name	Pdcl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560120 CCDS:CCDS14903.1 GeneID:68833 MGI:1916083
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006915 - apoptosis [Evidence IEA] codon_start : 1 note : IAP-associated factor VIAF1 product : phosducin-like 3 protein_id : NP_081126.2

name	Npas2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679102 GeneID:18143 MGI:109232
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0000155 - two-component sensor activity [Evidence IEA] GO_process : GO:0042745 - circadian sleep/wake cycle [Evidence IMP]; GO:0045475 - locomotor rhythm [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0000160 - two-component signal transduction system (phosphorelay) [Evidence IEA] codon_start : 1 exception : mismatches in translation product : neuronal PAS domain protein 2 protein_id : NP_032745.1

name	LOC100041999 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233828 GeneID:100041999
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477445.1

name	Rpl31 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716589 CCDS:CCDS14904.1 GeneID:114641 MGI:2149632
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 product : ribosomal protein L31 protein_id : NP_444487.1

name	Tbc1d8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82524296 CCDS:CCDS14905.1 GeneID:54610 MGI:1927225
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : BUB2-like protein 1; GRAM domain; vascular Rab-GAP/TBC-containing product : TBC1 domain family, member 8 protein_id : NP_061245.2

name	(CDS detail)
type	STS
link
xref	UniSTS:128588
definition	standard_name : D1Mit244

name	(CDS detail)
type	STS
link
xref	UniSTS:128589
definition	standard_name : D1Mit245

name	(CDS detail)
type	STS
link
xref	UniSTS:123821
definition	standard_name : 28.MMHAP28FLB4.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:165072
definition	standard_name : AI843383

name	(CDS detail)
type	STS
link
xref	UniSTS:122680
definition	standard_name : 01.MMHAP93FRA7.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128886
definition	standard_name : D1Mit518

name	(CDS detail)
type	STS
link
xref	UniSTS:207146
definition	standard_name : BB201698

name	(CDS detail)
type	STS
link
xref	UniSTS:165073
definition	standard_name : AI098020

name	(CDS detail)
type	STS
link
xref	UniSTS:161849
definition	standard_name : RH125027

name	(CDS detail)
type	STS
link
xref	UniSTS:234111
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:207147
definition	standard_name : AU022044

name	(CDS detail)
type	STS
link
xref	UniSTS:207148
definition	standard_name : RH126814

name	(CDS detail)
type	STS
link
xref	UniSTS:22322
definition	standard_name : STS-D80227

name	(CDS detail)
type	STS
link
xref	UniSTS:234112
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128679
definition	standard_name : D1Mit321

name	(CDS detail)
type	STS
link
xref	UniSTS:185434
definition	standard_name : AW556253

name	(CDS detail)
type	STS
link
xref	UniSTS:165074
definition	standard_name : AI851349

name	(CDS detail)
type	STS
link
xref	UniSTS:15159
definition	standard_name : D5S1969

name	(CDS detail)
type	STS
link
xref	UniSTS:234113
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:158788
definition	standard_name : AU041319

name	(CDS detail)
type	STS
link
xref	UniSTS:178379
definition	standard_name : AI507003

name	(CDS detail)
type	STS
link
xref	UniSTS:158787
definition	standard_name : 11.MHAa63e11.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:207150
definition	standard_name : RH126785

name	(CDS detail)
type	STS
link
xref	UniSTS:128457
definition	standard_name : D1Mit123

name	(CDS detail)
type	STS
link
xref	UniSTS:144052
definition	standard_name : Npas2

name	(CDS detail)
type	STS
link
xref	UniSTS:234118
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:233030
definition	standard_name : RH143784

name	EG625775 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94363317 GeneID:625775 MGI:3647848
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 13 Proteins product : predicted gene, EG625775 pseudo : _no_value transcript_id : XR_001877.1

clone name	MSMg01-319H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427A12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-427I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523P18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-361O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403F09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-497P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458C03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-522E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062E24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-419D20.T7 (MSMg01no419_d20.b1)	MSMg01-419D20.TJ (MSMg01no419_d20.g1)
ACC	AG514388	AG514389
length	1,204	770
length of high quality (start - end)	---	463 (62 - 524)
definition	CHROMAT_FILE: MSMg01no419_d20.b1 PHD_FILE: MSMg01no419_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:41 2005	CHROMAT_FILE: MSMg01no419_d20.g1 PHD_FILE: MSMg01no419_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:41 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	GGTGAGCGGCGTATATAGCTAAAATGCGCTGCCCGCGCGAGGACGGCCTT CCGCCGTTGTCCTGTGGGCGGTTAGCGCGGGTGTTTCTTTATTTTTATGT CGCCGGAGCGCGCTACGTCGTTCGCATTTTATCGCCCGGAACGGCGTGGT TTTGCTCCCGTTTTTACACTTTCTCGGTATCCGAATGGTGTAGCACTATC TGCCCACACGGCACGAATATGTTCCCCAGGGGACGAACCAACTCGCCTTA AGTATGTCGCGGAGTCGGACCACATANGTAGTTGTCCTTTTATATATTAA ACGCGCACCGACTCGTGTCGTTGACGCGCGGGTTGTGTCTACCAGTTTAG TTATATAGGTCGCAGACAAAGTGCGTACCGGTCGGCCGGCGCCCAGCGGC TATAACTATGCCCCTATAATCGGCGTTCGTGTGTGACCACCGCGCCACAT AGGGCGCCCCGTAATTTCAGTGCGCAGCTAGATGGCCATTGCTATAACGG GCGCGTTATCATATCCCGCCGCATGCGGTCGCGTTCCAGTATCTTCGTCG AGGTCCTGGCGTGGGCGCGGGTTTGTGCGGTCCACACGAGGACGCGCTGT GCCGTCGGATATTAAACTAAATGATCCGCGACGTCCCGTGAGCGCGGTGG CGCCCGAATAATGGCTGTGTCCGCGTGTTTTTGCGCGTGCAAACCCTCGA TACTAAACCACCCCTCTGTGTCCCATTATGCCGACTTCTGTGCGACGCGC ACGCGCTTATTTGTTGTTTTCACGTTCGCCGCGCACGCCCCACCATCTTC TTTATGTGGCGGCGATCACCGGTTTCGGTAAAGACGGCGCGCCCATTTAT TGTTGGTGGCGGAGGACGCGGGATACAGACAATTAGGAAGAATGTTGTTA ATTAGCGGCTTCCGCTCCGACTCACTATTTCGCGCTGTTCGTCGCGGCGG GTTGTATATTACGCGGCCGCCCGGGTTGTATAATTTATATATTTTTGTGT GCGCACCTTATTTCGCGTCTCGGCGACACGCCGCCGTTGTGGCCTATGGT ACTTATTCTCGCGCGTTAAACGCGTTTCGCGCGAACACACGCAAGAAGTG TTGTGTGGTATTATATATCGCGCAGCCCCAGTGTCCGTTTATTAATTTCC NCGCGCTCGCGCGCGCATGCCACGGCACACACCGTGTTTTGTGCGCTGCG TTGN	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXTTTCCTCCTTGGGAGACCCCAGCCTTGTTTTATGTTTGT TTTGTTTTGATTCCTTTGACTTATTAGATAAAACTTATCCTCCTTGTGGA TCACAACTGAAATCCTTACTGATTTTGACGCTACTCTCGTCTTTATATAT ATATATATATATATATACACATATATATATATATATATATACACATATAT ATATATATATATATATGCACAAAGATGTCAAAACTGGTAGTTCAGTAAAG AACTAGAAAATGTGTTCAGAGTAAGTGGGCATATAAACTGCTATTTTCTC TTCCTCTCCCTCTTCCTCTTCCGTCCTCCGCCCCATCTTCCTCTCCCTCT TCCTCCCCATCCTGTCCCCTCCACAGGTACCATGTGCCCTACGATGTTTT GAGCAGTGAGCATGGATGAACTCTGTGACTGCTCTGTAGCTGTCTAAGTT TCTGCAACATCAGCTTCTACATTCACTGCTGTACTTAGCATCAGAGAGGC AGATACCTCATCTGACTTGGTCCTCACAGTCTGTCTTCCTGTGTAGTTTC CTTGAAGACAAAGCAGGAGTCTTCTGTGTTTCGTTAGTAACTGCTTACTA AAGGAGCGATAATTGTTCCTCTAGCCCTAAACCTGAGGTTCTGGGTGTAA AAATTGGACTGAACACCCCTCCCCTCCTCCAGCTATACAAATACCCTATT TTGGGTGATTCCCCCCCAAN
quality values	Open. Hide. 6 6 7 7 9 9 7 7 8 9 9 10 11 11 9 8 8 10 8 8 11 8 8 8 8 8 8 8 10 10 8 8 8 10 8 10 8 8 8 8 8 8 8 8 6 8 8 9 10 10 11 10 9 10 10 9 8 8 8 8 6 6 6 6 8 10 10 11 7 7 8 8 8 8 10 10 6 7 7 10 10 9 9 9 13 13 15 10 8 8 8 8 8 8 10 10 6 6 6 6 6 6 6 8 8 6 6 8 8 8 8 6 6 6 6 6 8 9 10 11 8 8 8 7 7 7 7 13 15 10 8 8 8 8 8 10 8 8 8 8 8 10 8 10 10 10 8 8 8 8 8 8 10 10 8 8 10 6 7 9 7 6 6 10 8 8 6 6 6 8 8 8 12 12 8 8 6 6 6 6 8 8 6 6 6 6 8 8 11 10 10 10 10 8 8 8 8 8 8 8 8 8 10 8 8 11 11 10 9 9 9 8 10 8 8 8 6 6 6 6 6 6 8 7 9 9 9 9 10 6 8 8 8 7 8 8 6 6 8 8 6 6 8 6 6 8 8 10 8 6 6 6 7 8 10 11 11 6 6 6 6 10 8 6 6 6 8 8 8 8 8 8 10 8 9 3 0 3 6 8 6 8 8 10 10 10 10 10 11 8 8 8 10 10 10 10 10 10 10 11 10 13 10 9 9 10 7 6 8 6 8 8 8 8 8 8 6 8 6 7 10 6 6 8 8 10 12 13 12 10 10 6 6 6 6 10 6 6 6 6 8 6 6 6 6 6 7 6 6 8 8 6 6 6 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 9 9 9 10 8 6 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 6 6 8 8 10 10 6 6 6 6 6 6 7 8 7 8 8 8 6 8 6 6 7 7 6 6 6 8 8 8 8 8 9 11 8 8 8 8 8 7 7 7 9 8 8 8 8 8 8 8 9 9 9 9 9 10 10 10 10 10 8 8 8 8 8 8 8 9 9 9 9 9 10 6 10 6 6 8 8 8 6 6 8 6 6 6 8 6 6 6 8 8 9 8 8 8 8 8 10 9 8 8 8 8 8 8 12 10 8 8 8 8 8 8 8 7 6 8 8 6 6 8 6 6 7 7 9 8 8 6 8 8 10 8 6 6 6 6 6 6 10 10 8 9 8 6 7 7 7 10 10 6 6 6 8 9 6 6 10 8 6 6 6 6 6 8 8 19 8 8 8 8 8 10 11 8 6 6 6 6 8 8 8 8 10 6 7 8 7 8 8 8 8 8 8 8 8 8 6 6 7 7 10 11 12 8 8 8 8 8 6 6 6 6 8 8 10 6 6 6 8 8 10 10 6 6 6 6 8 8 6 6 6 6 8 6 6 6 6 11 11 8 8 6 6 7 6 6 8 10 10 13 10 8 8 8 8 9 9 8 8 8 8 8 6 8 6 6 6 6 6 6 7 6 6 8 7 8 8 8 10 9 8 8 8 8 8 8 6 13 6 6 8 8 12 8 8 7 7 7 8 8 8 7 7 9 8 10 8 8 8 10 7 6 8 8 10 10 10 11 11 16 11 11 10 10 12 10 7 6 6 6 6 8 6 6 8 6 6 6 6 7 6 8 8 8 8 7 11 8 8 6 6 6 8 8 9 8 10 10 10 10 10 8 8 6 7 7 9 12 7 8 8 8 8 8 10 10 10 8 8 8 11 10 13 13 13 11 10 11 11 10 6 6 6 6 6 9 8 6 6 6 6 7 10 6 6 7 7 10 8 10 8 9 6 6 8 8 6 6 8 6 6 6 6 6 6 6 6 6 6 8 6 8 8 8 8 8 8 6 6 8 8 8 9 10 10 11 15 10 9 6 7 7 6 8 8 6 6 8 8 8 8 8 8 8 8 8 11 10 10 6 7 7 6 6 6 8 8 6 6 8 8 8 8 8 8 8 8 6 6 6 8 10 8 8 8 10 6 6 6 6 6 6 6 6 6 6 6 6 9 10 12 14 9 9 7 10 8 8 8 10 11 8 8 8 8 8 8 10 10 10 8 10 13 8 8 9 13 10 9 9 8 8 8 8 8 8 10 12 8 8 6 6 8 6 6 6 8 10 8 8 8 6 8 8 8 8 8 10 12 8 8 8 9 8 8 9 9 9 9 9 8 8 8 8 8 8 8 8 6 6 7 7 9 9 9 9 9 10 8 8 8 8 6 8 8 8 10 10 6 6 6 7 8 8 8 8 6 6 8 8 9 9 9 9 8 8 8 8 8 8 8 6 6 6 6 6 8 8 10 10 8 8 8 8 8 8 8 8 8 8 11 11 10 10 11 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 9 10 8 6 6 6 6 8 6 10 10 10 10 11 9 8 6 13 6 6 6 8 8 6 6 8 8 11 10 9 9 9 11 11 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 6 6 6 6 8 8 8 8 9 9 8 8 10 9 7 6 6 6 7 6 8 3 0 3 8 8 10 8 8 8 8 8 8 8 8 8 10 9 9 8 8 10 8 8 10 10 8 10 8 8 8 8 8 8 10 8 8 8 8 7 6 8 8 8 8 7 7 6 6 9 13 10 10 10 3 0	Open. Hide. 24 28 30 30 32 37 39 39 39 39 39 37 39 44 44 39 25 18 9 6 6 7 7 6 6 10 10 8 8 9 9 10 18 23 30 31 31 31 28 31 48 50 50 47 36 29 23 11 11 12 12 12 12 12 9 9 17 21 25 33 33 41 48 48 59 59 59 59 59 57 57 57 57 57 50 57 57 57 57 50 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 50 50 50 50 50 51 68 68 68 68 57 57 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 57 54 54 59 59 59 59 59 59 59 48 48 47 59 43 48 48 48 48 48 59 59 59 59 59 59 59 59 59 57 57 48 59 59 59 41 30 37 30 25 19 8 8 8 10 17 28 37 59 47 47 59 59 59 59 59 59 59 59 59 59 59 59 59 48 48 48 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 54 54 54 57 59 59 68 57 57 57 57 57 57 46 46 43 43 43 48 48 48 48 48 48 48 43 42 39 30 30 39 39 43 48 59 59 48 47 43 43 39 59 59 59 59 47 47 47 43 41 37 37 41 41 39 41 41 41 41 48 48 48 48 48 48 48 48 48 48 48 47 47 32 34 23 25 25 33 34 37 37 37 37 30 18 15 21 18 21 30 31 25 22 24 28 35 37 37 31 30 37 39 43 32 34 23 23 23 27 28 22 22 19 27 17 14 15 15 15 28 34 30 30 14 14 14 28 28 39 28 28 13 19 19 18 12 18 16 18 12 14 13 27 22 32 23 23 23 32 32 32 23 23 34 25 24 14 14 14 21 28 25 25 18 18 10 10 10 15 10 10 10 10 10 8 8 8 8 10 9 13 12 18 10 10 10 10 12 16 20 19 19 9 9 9 11 11 17 12 11 10 10 10 10 9 10 10 10 14 15 10 8 8 8 8 8 8 8 10 10 15 10 10 10 13 10 18 15 13 11 11 11 19 15 13 10 10 10 10 10 12 18 10 10 10 10 10 10 14 16 11 9 9 9 10 10 14 13 13 10 9 8 8 8 10 9 8 8 8 8 8 9 8 8 8 8 8 10 11 17 12 10 10 9 10 9 12 8 9 9 9 9 10 18 19 12 12 8 9 6 8 8 8 8 8 9 10 10 16 12 10 10 8 11 8 8 6 6 8 6 8 6 7 8 8 8 8 8 8 8 8 8 9 10 10 12 12 8 8 10 8 8 8 8 8 8 8 9 10 15 17 8 8 6 6 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no419_d20.g1 MSMg01no419_d20.g1 CHROMAT_FILE:
MSMg01no419_d20.g1 PHD_FILE: MSMg01no419_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:41 2005
         (463 letters)



>mm_chr1_38536143_38537005
          Length = 863

 Score =  522 bits (270), Expect = e-152
 Identities = 324/352 (92%), Gaps = 20/352 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctccttgggagaccccagccttgttttatgtttgttttgttttgattcctttgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttcctccttgggagaccccagccttgttttatgtttgttttgttttgattcctttgact 273

                                                                       
Query: 61  tattagataaaacttatcctccttgtggatcacaactgaaatccttactgattttgacgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 272 tattagataaaacttatcctccttgtggatcacaactgaaatccttactgattttgacac 213

                                                                       
Query: 121 tactctcgtctttatatatatatatatatatatatacacatatatatatatatatatata 180
           |||||||||| |||       | |||||||||| |     ||||||||||||||||||||
Sbjct: 212 tactctcgtc-tta-------aaatatatatatgt----gtatatatatatatatatata 165

                                                                       
Query: 181 cacatatatatatatatatatatatgcacaaagatgtcaaaactggtagttcagtaaaga 240
           |||| | ||||||||       | ||||||||||||||||||||||||||||||||||||
Sbjct: 164 cacacacatatatat-------t-tgcacaaagatgtcaaaactggtagttcagtaaaga 113

                                                                       
Query: 241 actagaaaatgtgttcagagtaagtgggcatataaactgctattttctcttcctctccct 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 actagaaaatgtggccagagtaagtgggcatataaactgctattttctcttcctctccct 53

                                                               
Query: 301 cttcctcttccgtcctccgccccatcttcctctccctcttcctccccatcct 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  cttcctcttccgtcctccgccccatcttcctctccctcttcctccccatcct 1



 Score = 64.5 bits (33), Expect = 1e-14
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 137 tatatatatatatatatatacacatatatatat 169
           |||||||||||||||||||||||||||||||||
Sbjct: 165 tatatatatatatatatatacacatatatatat 197



 Score = 64.5 bits (33), Expect = 1e-14
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 161 tatatatatatatatatatacacatatatatat 193
           |||||||||||||||||||||||||||||||||
Sbjct: 165 tatatatatatatatatatacacatatatatat 197


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information