BAC Information

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BAC

Clone NameMSMg01-419F07
Chromosome1 (Build37)
Map Location 166,354,922 - 166,355,410
singlet/doubletsinglet
Overlap geneNme7
Upstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1
Downstream geneAtp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419F07.T7 (MSMg01no419_f07.b1)MSMg01-419F07.TJ (MSMg01no419_f07.g1)
ACCAG514458AG514459
length1,040759
length of high quality
(start - end)
---489 (72 - 560)
definitionCHROMAT_FILE: MSMg01no419_f07.b1 PHD_FILE: MSMg01no419_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:49 2005CHROMAT_FILE: MSMg01no419_f07.g1 PHD_FILE: MSMg01no419_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGCGTATTGATTGGGTCTGTGCGCGGCGTTCGTTTGTCGCCCCTCTCC
TCTACGACACTGCGTGTCTCCCGGTCTACCTTCAGCCTATATCTGCCGTC
GTCTCGAGTGACATCGTGCCGGGGATGGATGCGGAGAGCGGCATATCGCT
AATATATATGTAAGCGCCTTGTGACGCGTGTCCGATTTTTGCGCGTTCTA
TGGTGGTTGACGGGCGTTTCGCACTGCGTTGCCCACGTTCCTAACGTGTA
GTTTACTTGGTCGTACTCCCCGACCACTCTTTCTGGCGTCGCGCGCGCGC
GGTTATGACCCCCCCTTTGGCGCTTTTTTTTTAGTGTCGTACGTTTTACC
ACACGTCCGGTTTTTTCGCGCTTCCGGTGTTCTCATTCATTTATTCGGGC
CGTACATCGTCTCCACACAACGGGTGTTGTTTTAGTGCATCATTCTCCTA
TGCCCTCGCTCTTGCCCCACTTTACGTTTAAATTCTTGCTCATATGATAA
TGATATTTCGTGATGTCCCAACAGTTGACAGGGCGAACATAGGNCAAATA
TCCGNTATAAGTGATTCCTCCGGCGTGGGTGGCGGATATAATATTTTATT
AGGAGTTCGTTAGGAGAACGCACCTTCTCTAATACTAAAGTACGCCCATA
TATATGTCGTTGTTCCTATTTCACCGCAAGATGGTGTGGGATGAGTGCGC
TGATAGGCTAGATATATGGAGATGAGTGGAACAGCGCGCCCAGTATATTT
TTCGCGCGCAGACGGGCGTGTGTAATAGCAAACTAATACTTGCTGTTCGG
TTTTTTTGTTCGTTACTTGCTGCTACGACGGTCCCGCCTATTATACGTAT
TGCGCGCACTTTATCCACCCGCCGTCCCGCGTGTCGGTTATATTGTATGA
TCTCGCCACGATTATTTATGGTGATGGGTGAGTGTCCGGCGTAGACGATA
ATATATTAGTTGTTGGTATTATGCCGACGCGCATACACACTCTAGTTCGA
GCGTTGATTCTTTCGGCCTCTTGTTTCCGCCGCTATATCN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAGTAACCCAAATTCGGTAGAAAGGTG
CTCTCCAGGCCATAGGAAGGATGTAACTCATAAAGGTCATCCTCAGACAG
TAGCTGTCGTGAACAATTCCATTTGGAAAAACAAAATGCAGAGGGAAGAG
AAAGATGCCATTAGCTACATACTAAACATGGAGTGCTTTATCATTATAGA
ACTACATGAGTGTCTTAGGGTTTTACGGCTGTGAACAGACACCATGACCA
AGGCAAGTCTTATAAAGGACAACATTTAGTTGGGGCTGGCTTCCAGGTTC
AGAGTTCAGTCCATTATCATCAAGGCAGGAACATGGAAGCATCCGGGCAG
GCCTGGTACAAGATGAGCTTGAGAGTTTTGCATCCTCATCTGAAGGCTGT
TAACAGAATACTTGCTCACAGGCAGCTAGAATGAGGGTCTTATAGCCCAC
ACCCACAGTGATATACCTACTCCAACAAGGCCACACCTACCCCGTCATGG
TCACGCCTTTTGATAGTGCCACTCCCTGAGCCAAGCTTGTACAAATGAGC
AAATCATGTTTGAGCCACTTTATTAAGACCAAGGAGATTTTTATGGAGTT
ATCAGTTCAATGTACTCATTGTAAAAAGAATTTGGCCAATTTATGTGATA
TTAACTCTCTTTGGGTATTTCTAAGGACGGCTCCTCTCATAAAGGGGTCT
AATTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_f07.g1 MSMg01no419_f07.g1 CHROMAT_FILE:
MSMg01no419_f07.g1 PHD_FILE: MSMg01no419_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:49 2005
         (489 letters)



>mm_chr1_166354722_166355610
          Length = 889

 Score =  845 bits (437), Expect = 0.0
 Identities = 476/489 (97%), Gaps = 1/489 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagtaacccaaattcggtagaaaggtgctctccaggccataggaaggatgtaactcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagtaacccaaattcggtagaaaggtgctctccaggccataggaaggatgtaactcat 260

                                                                       
Query: 61  aaaggtcatcctcagacagtagctgtcgtgaacaattccatttggaaaaacaaaatgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggtcatcctcagacagtagctgtcgtgaacaattccatttggaaaaacaaaatgcag 320

                                                                       
Query: 121 agggaagagaaagatgccattagctacatactaaacatggagtgctttatcattatagaa 180
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 321 agggaagagaaagatgccattagctacatactaaacacggagtgatttatcattatagaa 380

                                                                       
Query: 181 ctacatgagtgtcttagggttttacggctgtgaacagacaccatgaccaaggcaagtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacatgagtgtcttagggttttacggctgtgaacagacaccatgaccaaggcaagtctt 440

                                                                       
Query: 241 ataaaggacaacatttagttggggctggcttccaggttcagag-ttcagtccattatcat 299
           ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 441 ataaaggacaacattgagttggggctggcttacaggttcagaggttcagtccattatcat 500

                                                                       
Query: 300 caaggcaggaacatggaagcatccgggcaggcctggtacaagatgagcttgagagttttg 359
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaggcagaaacatggaagcatccgggcaggcctggtacaagatgagcttgagagttttg 560

                                                                       
Query: 360 catcctcatctgaaggctgttaacagaatacttgctcacaggcagctagaatgagggtct 419
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcctcatctgaaggctgctaacagaatacttgctcacaggcagctagaatgagggtct 620

                                                                       
Query: 420 tatagcccacacccacagtgatatacctactccaacaaggccacacctaccccgtcatgg 479
           || || |||||||||||| ||||||||||||||||||||||||||||||||||  |||||
Sbjct: 621 taaagtccacacccacagggatatacctactccaacaaggccacacctaccccaacatgg 680

                    
Query: 480 tcacgcctt 488
            ||||||||
Sbjct: 681 ccacgcctt 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)