BAC Information

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BAC

Clone NameMSMg01-419J01
Chromosome1 (Build37)
Map Location 176,278,594 - 176,278,984
singlet/doubletsinglet
Overlap genenone
Upstream geneCadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik
Downstream geneOlfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419J01.T7 (MSMg01no419_j01.b1)MSMg01-419J01.TJ (MSMg01no419_j01.g1)
ACCAG514637AG514638
length766723
length of high quality
(start - end)
391 (80 - 470)524 (75 - 598)
definitionCHROMAT_FILE: MSMg01no419_j01.b1 PHD_FILE: MSMg01no419_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:09 2005CHROMAT_FILE: MSMg01no419_j01.g1 PHD_FILE: MSMg01no419_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:09 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGCCCATGTCTATATTTGCGGCGCTATACGACTCCTATTTCGAGAGGATC
CGCGGAATTCTCAGTTTTTCTAAAAAGGATAGACTTTGTGAAACCACAAG
GCAATGTTCAATTAGGGCAGAATTCTACACAATTAGCTGGGAGGTACAGG
AGGGAGTGGTTAAGCTATTGGGTGAGGGTACAGTCATTCTCTCTGTATGC
CCCTTGAATTAGTCAGGGTTCTCTCAAGTCACAGATCTTATGGGATGTCT
CTCTATATTGAAGGAATTTATTGTGATGACTTACAATCTATAGTCCAACT
AACCCAATAATGGTCAGCTGTGAATGTTAAGTCCAAGAATCTAGTAGTGG
CTCAGTCCCACAAGGCTAGTTGTTTCAGCTAGTCTTCTGTAGAAGTAGGT
TTAGTCTCCATAGCATAATAATACATTATTCTACCAAGGAATAGTTGCTG
AACACAAATATTCCTTATCCAGTGGAATACACTAAGTATACTCCAAGGTT
TACTTCTTTGGTCAAGTTTGAACACTAATCTGACCTGAGAAAAATTAAAT
ATTTTTCCCCCGGGANTTAAGGAATTTATCTTAACCCCGGGCCCTCCCCT
TTTTACCAAAAGNAAGGCAAAAACCCCTCTTTTATTGGTGGGGTCAATCA
CACCCCCCCTTATTGGCGCTTTCTTCCTTTTAGCAAAAAGGGAGGGGGCC
CCCTGTTGTGTTTGCTCTATACCCAAGTTTTTTCTTTCTTCTTGTCTTCC
CCTTTTTCCCCTTTTC
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAAGCTAACCACCAAAAAACCAAA
CAACTCAATCAAAAAATGAGGTATAGAATGAAATCAAGAATTCACAACAG
AGGAATTTTGCATGGCTGAGAAACAAGTAAAGAAATGTTCAAAGTCCTTA
GTGATCAGAGAAATGCAAATCAAAATAAGCCTGTGATTCCACAGTACACT
AATCAGAATGGCTAAGATCAAAACCTCAGGTGACATCACATGTTGTCGAG
GATGTGGAGAAAGAGGAATATTCCTACATTGCTGGTGGAATTGCAAACTG
GTACAGCCACTCTGGAAATCAATCTGGAGGTTCCTCAGGAAACTGGAAAT
AGATCTACCTGAAGACCCAGCAATACCACTCTTGGGAATATACACAAAAG
ATGCCCCACTATCCCACAGGGGCACATGTTTCACTATGTTCACAGTAGCC
TTATTTTTGATAGCTAGAAGCTAGAAACAACCCAGATGTTCCATGACAGG
AGAATGGTTACAAAAAAATGTGGTTTATTTACACAGTGGAGTACTACTCA
GCGATTAGGAATGAGGATATTCTGAGTTTTGCAGGCAAATAGATGGAACT
AGAAAATATCATCCCGAGTGAGGTAACTCCGACCCCAAAGGACCTGCCTG
GTATATACTCACTAATAAGTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_j01.b1 MSMg01no419_j01.b1 CHROMAT_FILE:
MSMg01no419_j01.b1 PHD_FILE: MSMg01no419_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:09 2005
         (391 letters)



>mm_chr1_176278394_176279184
          Length = 791

 Score =  741 bits (383), Expect = 0.0
 Identities = 389/391 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagactttgtgaaaccacaaggcaatgttcaattagggcagaattctacacaattagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagactttgtgaaaccacaaggcaatgttcaattagggcagaattctacacaattagctg 260

                                                                       
Query: 61  ggaggtacaggagggagtggttaagctattgggtgagggtacagtcattctctctgtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggtacaggagggagtggttaagctattgggtgagggtacagtcattctctctgtatg 320

                                                                       
Query: 121 ccccttgaattagtcagggttctctcaagtcacagatcttatgggatgtctctctatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccttgaattagtcagggttctctcaagtcacagatcttatgggatgtctctctatatt 380

                                                                       
Query: 181 gaaggaatttattgtgatgacttacaatctatagtccaactaacccaataatggtcagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggaatttattgtgatgacttacaatctatagtccaactaacccaataatggtcagct 440

                                                                       
Query: 241 gtgaatgttaagtccaagaatctagtagtggctcagtcccacaaggctagttgtttcagc 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaatgggaagtccaagaatctagtagtggctcagtcccacaaggctagttgtttcagc 500

                                                                       
Query: 301 tagtcttctgtagaagtaggtttagtctccatagcataataatacattattctaccaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtcttctgtagaagtaggtttagtctccatagcataataatacattattctaccaagg 560

                                          
Query: 361 aatagttgctgaacacaaatattccttatcc 391
           |||||||||||||||||||||||||||||||
Sbjct: 561 aatagttgctgaacacaaatattccttatcc 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)