BAC Information

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BAC

Clone NameMSMg01-419J06
Chromosome1 (Build37)
Map Location 69,742,061 - 69,911,843
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419J06.T7 (MSMg01no419_j06.b1)MSMg01-419J06.TJ (MSMg01no419_j06.g1)
ACCAG514647AG514648
length752786
length of high quality
(start - end)		351 (76 - 426)369 (71 - 439)
definitionCHROMAT_FILE: MSMg01no419_j06.b1 PHD_FILE: MSMg01no419_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:10 2005CHROMAT_FILE: MSMg01no419_j06.g1 PHD_FILE: MSMg01no419_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,742,061 - 69,742,411)(69,911,475 - 69,911,843)
sequence
CTTCCTCGTCTCTAATTTTGGGGCGCTAAANGAATCACTATTCAGAGAGA
TCCGNGGAATTCACTATATTTCCATGCAAGGCTAAAGGAACATGTGATTG
GTTGATTAGTCGGATAATTTTTTTTTTCTTTTAAAGTAACACTTCATCCT
TTCCTAATACTGATGTAAAAGTATTGACAGCAGTGAAGGGATTCAATGAA
GGTAGCAGAAGATTGATCAAAAGGAGAATCTGTTGGGCAAGGACAGAATA
GACTCTGTTACACAGATGGCCTGATTAGTGTCGGGTAAGAAAACATGCCT
CTTGGGCATGAAAAGAATAAGCAAACATACTAGTTAGCTTATTAATTTTC
ATAATGGTAAATTGGGAAAGTTTTAAGACACCATCAATTCTTTTTTACTA
TGAATAAATGGAACAGCCATTGAGAGAATATGAGGAGCTTAAAAAGTTAC
AGAAAACATTATAGTTAAAGACCTTGCTAAAGCTGACACAAAGAAAAAGT
TGGCCTCGGAAGTCACCAAAAAGGAATAATCTGGGAAAAAAATGAACTAC
CCATTGGAAAAGAAAAGCCCTTCTAAAAATTGCCCCACAAAAACAATTTG
GTCCAAAAAATCCCCCTGGTTTCCAAAAAAAAAATCCAGATATGGCGCCC
ACCCCATCCCTCCTTTATATACCTCCCCCCGCCCCACATGGTGGGGTGTT
ACACCCAACCTCCCTTTTTTTCCCCTCGCCCCCTCGAAAAATTTTCCTTT
TG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGCCAGATAGAAGAAAAACTTCATTATATT
TTTAACTGCAAAAGGAGGGGATATAGCCATGTCCAGAAAAAAAATAATAC
CTTCTTAATTTAACAAGCAATTACCTAAACACTAAAGCATGAAATTTTAT
GGGCTTCGTTATTATCTTTATTTTCACACTGTTTGTTTCTAAAAGTCATT
AAATTAAATGGGTCTTCTTAAAGCTGGACACTCTTTGACCTTTTATAGAA
GTGAATTTTGTACTCAAAATCAGGGCCCTTTAAGAAAGCACCTGTCTTGT
TTTGGTTTTTTCTCCATATTAATTGCCATTTAATTTTAACTTTCTTTAGT
CCTGTACTCTTTGGCAGAAGGTAATAAAGTGTTTTGTTTTGCTTTGTCTT
AAGAAGAGTACACTTCTGTTTGGTTTCTCAGTATTTCTCCCATCACACAT
TTGGGGCTCTTTATACACCCTTTTCTAGCCTGCTTTACATTTCCCCTTAT
TGTTATAGATTCCGGAATTAAACAACATTTCTTTTTTTTCGCCACACACT
TTCACCCCCAATAAAATATCTCTTTATATCCCTCACCCGGCACATTCATA
ATAACAGCTTAATTCCTTTTTCTATCTCGTTCTCTTTAAACCCCATCCAC
CTATCTTCTTTCTTTTTTTTTACACTTCCCACCTTATACCTCCCTTTCCT
CACCCTAATCTTTTTCTCTATCTTTTTCTCTAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_j06.b1 MSMg01no419_j06.b1 CHROMAT_FILE:
MSMg01no419_j06.b1 PHD_FILE: MSMg01no419_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:10 2005
         (351 letters)



>mm_chr1_69741861_69742611
          Length = 751

 Score =  671 bits (347), Expect = 0.0
 Identities = 350/351 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaggctaaaggaacatgtgattggttgattagtcggataattttttttttcttttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaaggctaaaggaacatgtgattggttgattagtcggataattttttttttcttttaaa 260

                                                                       
Query: 61  gtaacacttcatcctttcctaatactgatgtaaaagtattgacagcagtgaagggattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaacacttcatcctttcctaatactgatgtaaaagtattgacagcagtgaagggattca 320

                                                                       
Query: 121 atgaaggtagcagaagattgatcaaaaggagaatctgttgggcaaggacagaatagactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaggtagcagaagattgatcaaaaggagaatctgttgggcaaggacagaatagactc 380

                                                                       
Query: 181 tgttacacagatggcctgattagtgtcgggtaagaaaacatgcctcttgggcatgaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttacacagatggcctgattagtgtcgggtaagaaaacatgcctcttgggcatgaaaag 440

                                                                       
Query: 241 aataagcaaacatactagttagcttattaattttcataatggtaaattgggaaagtttta 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataagcaaacatacaagttagcttattaattttcataatggtaaattgggaaagtttta 500

                                                              
Query: 301 agacaccatcaattcttttttactatgaataaatggaacagccattgagag 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacaccatcaattcttttttactatgaataaatggaacagccattgagag 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no419_j06.g1 MSMg01no419_j06.g1 CHROMAT_FILE:
MSMg01no419_j06.g1 PHD_FILE: MSMg01no419_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:10 2005
         (369 letters)



>mm_chr1_69911275_69912043
          Length = 769

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccagatagaagaaaaacttcattatatttttaactgcaaaaggaggggatatagccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agccagatagaagaaaaacttcattatatttttaactgcaaaaggaggggatatagccat 510

                                                                       
Query: 61  gtccagaaaaaaaataataccttcttaatttaacaagcaattacctaaacactaaagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtccagaaaaaaaataataccttcttaatttaacaagcaattacctaaacactaaagcat 450

                                                                       
Query: 121 gaaattttatgggcttcgttattatctttattttcacactgtttgtttctaaaagtcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gaaattttatgggcttcgttattatctttattttcacactgtttgtttctaaaagtcatt 390

                                                                       
Query: 181 aaattaaatgggtcttcttaaagctggacactctttgaccttttatagaagtgaattttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaattaaatgggtcttcttaaagctggacactctttgaccttttatagaagtgaattttg 330

                                                                       
Query: 241 tactcaaaatcagggccctttaagaaagcacctgtcttgttttggttttttctccatatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tactcaaaatcagggccctttaagaaagcacctgtcttgttttggttttttctccatatt 270

                                                                       
Query: 301 aattgccatttaattttaactttctttagtcctgtactctttggcagaaggtaataaagt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 269 aattgccatttaattttaactttctttagtcctgtactctttggtagaaggtaataaagt 210

                    
Query: 361 gttttgttt 369
           |||||||||
Sbjct: 209 gttttgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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