BAC Information

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BAC

Clone NameMSMg01-419K07
Chromosome1 (Build37)
Map Location 109,237,754 - 109,237,928
singlet/doubletsinglet
Overlap genenone
Upstream genePhlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414
Downstream geneSerpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419K07.T7 (MSMg01no419_k07.b1)MSMg01-419K07.TJ (MSMg01no419_k07.g1)
ACCAG514696AG514697
length747749
length of high quality
(start - end)
175 (322 - 496)481 (69 - 549)
definitionCHROMAT_FILE: MSMg01no419_k07.b1 PHD_FILE: MSMg01no419_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:15 2005CHROMAT_FILE: MSMg01no419_k07.g1 PHD_FILE: MSMg01no419_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACCCATAAATAATGGTGCGGTCATAGAACCNTAATTTCAAATAAGGCGG
AAANCCNNGATGTACACAAAAACGAAGAGANACCCNAAAAGGGGTTATAC
TCCAAAAGACTGGTTTCCGCAAATCTACGAAAAAGAAACCAAGAACCCAG
AACACCTATATTGAGTCTGTGTGTTAAACCTTACTCCGGGATCTAAGGAA
TGTGAACAAAATTTGGGTCTTTTGAAAATATAAGCAGCAAGGAAGTCCAA
TTTAAGTGAAAAAGAAAATAAAAATTAAGGTTTTTTGGAGAAGAAGAAAA
CTATAGAACTTTGTAGTAATTCAAGAGGGAGTTAGGCCAAGGCAAGAAAA
TATTTGTAAACAATTTTAGGAGACCACCTGAATGTTAATCTTCAGTGCTT
CTAAGTTAGGGCCAAATCTATTGCACAGTCAGCTGAAATTGCATCCATCC
CAGTTCTGCCAACTGGCCATGTCAGTCTTTCTCTCAGGATCCTCCCATTC
ATAAGAATCCAGGCGGTTTCCGGCATAGGTTTGTGAAAGAGTTTGTTCCC
AGCTTACATATATTATATCCCCGTCGCTAAATCGGCCCACGTTCTTTCTT
GAACACGTTACCCCTCCCCCATAACTTTTGGGAAACCAGCCCCGCTGAAC
CCCCTATTTTATCTACCCCTGTTTCCCGGGTAACAACCTTATAAAAAACC
CCCCCCACACCTTTTTTTCCGCGCATTTATTTTATTCTTTCCCGCCC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAAT
TCAGGTGTCAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCATCT
GGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAAGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAC
ACATTCTCAAAGGAACTCACACAATATGTACTCCCTGATAAGTGGATATT
ATCCCTAACCTAGGAAACCCCCGAAATAAGGTAACAATTTCTAAACCCTT
GAAACTCACGAAAATGAAAATGGAGGGGGGGGCTCCTGCCCCTCCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_k07.b1 MSMg01no419_k07.b1 CHROMAT_FILE:
MSMg01no419_k07.b1 PHD_FILE: MSMg01no419_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:15 2005
         (175 letters)



>mm_chr1_109237554_109238128
          Length = 575

 Score =  315 bits (163), Expect = 8e-91
 Identities = 172/175 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagagggagttaggccaaggcaagaaaatatttgtaaacaattttaggagaccacctga 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 375 caagagggagttaggccaaggcaagaaaatatttggaaacaattttaggagaccacctga 316

                                                                       
Query: 61  atgttaatcttcagtgcttctaagttagggccaaatctattgcacagtcagctgaaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atgttaatcttcagtgcttctaagttagggccaaatctattgcacagtcagctgaaattg 256

                                                                  
Query: 121 catccatcccagttctgccaactggccatgtcagtctttctctcaggatcctccc 175
           ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 255 catccatcccagttctgccaattggccatgtcagcctttctctcaggatcctccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)