Query= MSMg01no419_k13.b1 MSMg01no419_k13.b1 CHROMAT_FILE:
MSMg01no419_k13.b1 PHD_FILE: MSMg01no419_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:16 2005
(201 letters)
>mm_chr1_47334987_47335587
Length = 601
Score = 373 bits (193), Expect = e-108
Identities = 199/201 (99%)
Strand = Plus / Plus
Query: 1 atggtgttagacaaccttttgggtactggatagctgaaacttgtttgcaaataagatttt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggtgttagacgaccttttgggtactggatagctgaaacttgtttgcaaataagatttt 260
Query: 61 gaaaaggtaatcagggaacagctgccacaagtccaattgttcattaaggaatactctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaggtaatcagggaacagctgccacaagtccaattgttcattaaggaatactctttt 320
Query: 121 aggaagtgcaaattaggatgtatagatgcacacatgctaaatacaatgtgtggttaagtc 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aggaagtgcaaattaggatgtatagatgcacacatgctaaatacaatgggtggttaagtc 380
Query: 181 agtcagattgcaaactgttaa 201
|||||||||||||||||||||
Sbjct: 381 agtcagattgcaaactgttaa 401
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space: 114449
Effective search space used: 114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no419_k13.g1 MSMg01no419_k13.g1 CHROMAT_FILE:
MSMg01no419_k13.g1 PHD_FILE: MSMg01no419_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:16 2005
(572 letters)
>mm_chr1_47515709_47516680
Length = 972
Score = 799 bits (413), Expect = 0.0
Identities = 431/437 (98%), Gaps = 2/437 (0%)
Strand = Plus / Minus
Query: 1 catcagaataaaattaatggtaattgagacaaaaataacaacacattaaaatcatagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 catcagaataaaattaatggtaattgagacaaaaataacaacacattaaaatcatagcta 377
Query: 61 ttataaaaagtacttacagttaagataatttcattctttcttgagaactgatgtctataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttataaaaagtacttacagttaagataatttcattctttcttgagaactgatgtctataa 317
Query: 121 catctacttattatatacataaatatatgtgtatattcatttatgaatttttcaggatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 catctacttattatatacataaatatatgtgtatattcatttatgaatttttcaggatat 257
Query: 181 ttataaataattattggggttcaaaaagtaaagtgactccaactcatgcatagcatctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttataaataattattggggttcaaaaagtaaagtgactccaactcatgcatagcatctta 197
Query: 241 agtttgattctctgaggtcctcataagggtagaagagaactgattccacagagctgtcct 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agtttgatac-ctgaggtcctcataagggtagaagagaactgattccacagagctgtcct 138
Query: 301 ctatcctccacatatacactgcttccacatacacataaataataataatagttaattttt 360
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 137 ctatcctccacatatacactgcctccacatacacataaataataataatagttatttttt 78
Query: 361 gtgctatttatagagaggataaggacttacatgagtaccttccagaaattaaattctgtt 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 gtgctatttatagagagtataaggacttacatgagtaccttccagaaattaaattctgtt 18
Query: 421 ta-tttctgtttttaaa 436
|| ||||||||||||||
Sbjct: 17 tattttctgtttttaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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