Query= MSMg01no419_l16.b1 MSMg01no419_l16.b1 CHROMAT_FILE:
MSMg01no419_l16.b1 PHD_FILE: MSMg01no419_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:21 2005
(318 letters)
>mm_chr1_144071324_144072041
Length = 718
Score = 536 bits (277), Expect = e-157
Identities = 307/325 (94%), Gaps = 14/325 (4%)
Strand = Plus / Minus
Query: 1 cttactgcaacttaaaaggaaaagtttggatgctatccctgggaagcctgctattctgaa 60
||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 700 cttactgcaacttaataggacaagtttggatgttatccctgggaagcctgctattctgaa 641
Query: 61 tggaaaatgaggagctatggatctgagagagtaaagaggtgagggagaactgggtggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tggaaaatgaggagctatggatctgagagagtaaagaggtgagggagaactgggtggagt 581
Query: 121 ggaggaagagaggctaaggttgctatgttttgtatgaaacaagagtaaaatttta----- 175
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 580 ggaggaagagaggctaaggttgctatgttttgtatgaagcaagagtaaaattttaaaaca 521
Query: 176 --ttttttttctgtactcaagtatataatacacagaatataacaggtctatcttttagca 233
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agt-------ctgtactcaagtatataatacacagaatataacaggtctatcttttagca 468
Query: 234 gtcaaaatttaatttaacacttatctttagattttataggattgtaaattatttggcata 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gtcaaaatttaatttaacacttatctttagattttataggattgtaaattatttggcata 408
Query: 294 gttttgccaaattaaatatatagtc 318
|||||||||||||||||||||||||
Sbjct: 407 gttttgccaaattaaatatatagtc 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_l16.g1 MSMg01no419_l16.g1 CHROMAT_FILE:
MSMg01no419_l16.g1 PHD_FILE: MSMg01no419_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:21 2005
(321 letters)
>mm_chr1_143932484_143933204
Length = 721
Score = 590 bits (305), Expect = e-173
Identities = 317/321 (98%)
Strand = Plus / Plus
Query: 1 actaaattaaaactactacatgtaattttctataaaaacaaagccaaaacttgaaaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaaattaaaactactacatgtaattttctataaaaacaaagccaaaacttgaaaaaag 260
Query: 61 gtatttgcaaactctgtttgataaaggatttatactaaaaataaatagaaaatttccata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatttgcaaactctgtttgataaaggatttatactaaaaataaatagaaaatttccata 320
Query: 121 tcattaaaaatggaaatatgatctgaataatagtaagaagaaatatattttgtgaaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattaaaaatggaaatatgatctgaataatagtaagaagaaatatattttgtgaaaagc 380
Query: 181 tgacaatgttttttacagggaaaattctaaacaatgaaatattactacacacatattata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacaatgttttttacagggaaaattctaaacaatgaaatattactacacacatattata 440
Query: 241 atgaaataagtgtaaacataacattcctgatactggtattactaaatttatggagacgag 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaaataaacataaacataacattcctgatactggtattactaaatttatggagacgag 500
Query: 301 tgaacactcacttgtcttctt 321
|||||||||||||||||||||
Sbjct: 501 tgaacactcacttgtcttctt 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
