Query= MSMg01no419_m13.b1 MSMg01no419_m13.b1 CHROMAT_FILE:
MSMg01no419_m13.b1 PHD_FILE: MSMg01no419_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:25 2005
(340 letters)
>mm_chr1_177987657_177988396
Length = 740
Score = 615 bits (318), Expect = e-180
Identities = 333/340 (97%), Gaps = 4/340 (1%)
Strand = Plus / Minus
Query: 1 ccaagaggaagaaaacaaaaggattgctaggtatctgggaggtgtgtgacagggagctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccaagaggaagaaaacaaaaggattgctaggtatctgggaggtgtgtgacagggagctca 379
Query: 61 ggccagaacagcccttcaatgaaaggaaggaggacaccaagagctatgggagagcagggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggccagaacagcccttcaatgaaaggaaggaggacaccaagagctatgggagagcagggg 319
Query: 121 gcacgacaggtgctcaactttctcatcatttcctgacctggatttaatatgtgtccattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcacgacaggtgctcaactttctcatcatttcctgacctggatttaatatgtgtccattt 259
Query: 181 tccttcataacacaaacacacatgttctcattctccatgcactctcctctcctcccctcc 240
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 258 tccttcataacacaaacacacatgttctcattctccatgtactctcctctcctccccttc 199
Query: 241 acctctatctatctatctatctatctatctatctatctatctatctatctatctatctct 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 198 acatctatctatctatctatctatctatctatctatctatctatctatctatct----ct 143
Query: 301 atctttatctctcatacccttggtctcaatttccttcatg 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 atctttatctctcatacccttggtctcaatttccttcatg 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_m13.g1 MSMg01no419_m13.g1 CHROMAT_FILE:
MSMg01no419_m13.g1 PHD_FILE: MSMg01no419_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:25 2005
(484 letters)
>mm_chr1_177835307_177836190
Length = 884
Score = 897 bits (464), Expect = 0.0
Identities = 479/484 (98%)
Strand = Plus / Plus
Query: 1 caggacagccacaactgtatagagagacccatcacaaacacacaaacaaataaacagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccacaactgtatagagagacccatcacaaacacacaaacaaataaacagaca 260
Query: 61 aacacgtcagccctcaagtagaaacaaaaatatcaagaaatgtaagtcagctgtgctacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacgtcagccctcaagtagaaacaaaaatatcaagaaatgtaagtcagctgtgctacc 320
Query: 121 ttcgcacagtggtagaacagagacttactcaaatacaatcccgtttcctgttgaatgcaa 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 ttcgcacagtggtagaacagagacttactcaaatacaatctcgtttcctgttgaatgcaa 380
Query: 181 gaatctctaagatgtatcagtaagcaggatcaaggaaaacaaagtattaacccgattgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatctctaagatgtatcagtaagcaggatcaaggaaaacaaagtattaacccgattgtt 440
Query: 241 tctgtagtatttatctttaggtaattttttcattgagtgtgggttcttttcctgttctgg 300
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tctgtagtagacatctttaggtaattttttcattgagtgtgggttcttttccttttctgg 500
Query: 301 tatatgaagaagacttaggagttaaaagcagttctttgagaacacagggaatttggggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatgaagaagacttaggagttaaaagcagttctttgagaacacagggaatttggggag 560
Query: 361 acccacacacccatctctaacaaccaaaataaattaacaaaaatttcaatttatcttcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acccacacacccatctctaacaaccaaaataaattaacaaaaatttcaatttatcttcag 620
Query: 421 gttcctgggctctgtaggtctagttctatggactctttttctacaaccaagatcaagccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcctgggctctgtaggtctagttctatggactctttttctacaaccaagatcaagccc 680
Query: 481 ctgg 484
||||
Sbjct: 681 ctgg 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
