BAC Information

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BAC

Clone NameMSMg01-420C02
Chromosome1 (Build37)
Map Location 74,967,898 - 74,968,397
singlet/doubletsinglet
Overlap geneCcdc108
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2
Downstream geneIhh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420C02.T7 (MSMg01no420_c02.b1)MSMg01-420C02.TJ (MSMg01no420_c02.g1)
ACCAG515068AG515069
length737732
length of high quality
(start - end)		503 (50 - 552)610 (70 - 679)
definitionCHROMAT_FILE: MSMg01no420_c02.b1 PHD_FILE: MSMg01no420_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:52 2005CHROMAT_FILE: MSMg01no420_c02.g1 PHD_FILE: MSMg01no420_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGCTTTCTGTGCCGTATGCAGAGATCTTGGCTCTCCTTG
GAGACAGCATCATCCAAACCTGGGTGGGCCCCAAATGTGTATCTAGGGAC
GGAGAACTGAGGAAGGACGCCTTTCCCTCTTATTCTCCCCACCTCCCAGA
CGTTCCCAGCAGTGTCTCCTGGAAAACCCTCCTACAGAAGCCTGTTTTTG
GTCAACAAAGGCTCCATGCTCATGACCTTCAGCCTGGCCCCCAATAGCAG
CTCGGACATCACCCTGAGGCCCTCCTCTGGCCTCATCAGTCCTGGAGCCC
ACCAGGTCTTCCTTATAAGCACATACCCCAAGGGCACCTCATGGAGGCAG
CACATTTTCTACCTGAACTTCAACTTTTATCCCCAGTACCTCAAGGTAGG
AGGCAGGGGTAGAGGAACTGGGCCTTTACTGGGTCTTCAGGCCACCACGA
TTTGTCACTTTTTTTTCAAAACCACATTTTTAGGGTCTGTGCCAACATAT
GGTGGGATGGGAGTTGGGGGGCATTTCTTTAATGANGAGGAAATGGGAAG
GTATTTTTNNNNTTTTTNNTATNNNNTTTTTTATTTANTNNTTTNNNTTT
TTTTTTTTTTTTTTANATANNNNTTATTATATAATTTTTTTATATATATT
TAATATTTANNACTTTTTATTTAATCCTTTTTTTTTT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGCATTCTGGAAGCCCTGGGTTCAACTTC
CAGCAATGGGAGACTATGTCTTCATTGAGGCCTGAGTATAACAGTGGCCT
CAGCTGGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGACAGAGACAG
GTAGATTTCTGAGTTCAAGGTCAGCCTGGTCTACAGAGTTCCGGGACAGC
CAAGGCTATACAGAGAAACCCCGTCTGGAAAAACCAAAACCAAAACCAAC
CAACCAAACAAACAAACAAAAACCAGTGGCCTCAACCGGGCGTGGTGGAG
CATGCCTTTAATTCCATCACTCGGGAGGCAGAAGCCGGTCGATTTCTGAG
TTCGAGGCCAGTCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTGC
ACAGAGAAACCCTGTCTCAGAAAACAGAACAGAACAGAACAGAACAGAAC
AGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAAC
AGAACAAAAAAAACACTAAAACAAAAACAAACAAACAAACAAACAAACAA
AAACCAGTGGCCTCAAGATAGTCATGGCAGCAGGGGAACTGCCAGAGATG
AGCTGAGCTAGGGAAAGTGACAGAGTTTTCTAAGATGCTGAGGCTGGACT
AATCTATGATCAGCTCAAACAAGTGCTTGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_c02.b1 MSMg01no420_c02.b1 CHROMAT_FILE:
MSMg01no420_c02.b1 PHD_FILE: MSMg01no420_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:52 2005
         (503 letters)



>mm_chr1_74967695_74968597
          Length = 903

 Score =  936 bits (484), Expect = 0.0
 Identities = 496/500 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgctttctgtgccgtatgcagagatcttggctctccttggagacagcatca 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ggaattctttgctggctgtgccgtatgcagagatcttggctctccttggagacagcatca 644

                                                                       
Query: 64  tccaaacctgggtgggccccaaatgtgtatctagggacggagaactgaggaaggacgcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tccaaacctgggtgggccccaaatgtgtatctagggacggagaactgaggaaggacgcct 584

                                                                       
Query: 124 ttccctcttattctccccacctcccagacgttcccagcagtgtctcctggaaaaccctcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttccctcttattctccccacctcccagacgttcccagcagtgtctcctggaaaaccctcc 524

                                                                       
Query: 184 tacagaagcctgtttttggtcaacaaaggctccatgctcatgaccttcagcctggccccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tacagaagcctgtttttggtcaacaaaggctccatgctcatgaccttcagcctggccccc 464

                                                                       
Query: 244 aatagcagctcggacatcaccctgaggccctcctctggcctcatcagtcctggagcccac 303
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 463 aatagcagctcggacatcaccctgaggccctcctctggcctcatcggtcctggagcccac 404

                                                                       
Query: 304 caggtcttccttataagcacataccccaagggcacctcatggaggcagcacattttctac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 caggtcttccttataagcacataccccaagggcacctcatggaggcagcacattttctac 344

                                                                       
Query: 364 ctgaacttcaacttttatccccagtacctcaaggtaggaggcaggggtagaggaactggg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctgaacttcaacttttatccccagtacctcaaggtaggaggcaggggtagaggaactggg 284

                                                                       
Query: 424 cctttactgggtcttcaggccaccacgatttgtcacttttttttcaaaaccacattttta 483
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 283 cctttactgggtcttcaggccaccacaatttgtcacttttttttcaaaaccacattttta 224

                               
Query: 484 gggtctgtgccaacatatgg 503
           ||||||||||||||||||||
Sbjct: 223 gggtctgtgccaacatatgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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