BAC Information

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BAC

Clone NameMSMg01-420E04
Chromosome1 (Build37)
Map Location 18,188,088 - 18,188,466
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4
Downstream geneEG574082, EG654460, Defb17, LOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420E04.T7 (MSMg01no420_e04.b1)MSMg01-420E04.TJ (MSMg01no420_e04.g1)
ACCAG515168AG515169
length720715
length of high quality
(start - end)
380 (80 - 459)247 (67 - 313)
definitionCHROMAT_FILE: MSMg01no420_e04.b1 PHD_FILE: MSMg01no420_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:03 2005CHROMAT_FILE: MSMg01no420_e04.g1 PHD_FILE: MSMg01no420_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGAGGAGCCG
CGGAATTCAATGAATACNCACAAAAGTGGTTACAGTTTTTATGGGAAAAT
ATTTTATAGGAAAACATTATTGAGCTATTTATCTTTATAGTAACCAAAGC
TTTCAAAAATAATCATCCAAAAGCTTTATTCACATATTTATTGAAGTTCC
TTTTGTCTGCCTTAGTATGATGTCTCGAAATGACTTGAGAGTGTGGGTTC
TATCATCATCATTGTGTGTCTTATATGCTTTCCTTATGGTATACAAACAA
TGAAAGGCTTCCCAATTTATCCTAATAAAGATGCATCACACTGAAATCTA
AAATGTTTCAATTAAAATAGAAAAAGTGTTCAGATTTTAGTATTGCAACC
AAAATATACTTTATATATATGAATTTACTACTTAAACACTGATTCATTAA
ACTCCTCACAATTTAGTGTTAAGTCAAAATAAAAATGTTGTAGTGCATGG
AGTGTACCCTCCTGAAAAATTATAAGAACAAGAAGTCACATTAAATGTTA
TAATATTTACCTAAAATTATACTTATCCCAAGAATTTAGGAGAATTGAAA
TTAATAATGCTTTTTTGTAATGATGTCATAATTTCTTCAGTATCATTTTA
TAGGCGCATGTTTGAGTATAATAACTACAAGATTATTAGAATAGATAACA
CGTTTACCAAGATTTTTGTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTACCAGCAAAATTCCTGATCTCTCTAAGACTTTTTATCATGAAT
AGGTGTTGGATTTTGTCCAATGCTTTCTCAGCATCTAGCGAGACGATCAT
GTGGTTTTTTTTTTTTTTACTTTGAGTTGTTTATATAGTGGATTACGTTG
ATGGACTTCCATATATTTAACCATCCCTGCATCCTTCAGATGAAGCCAAT
TTAATCATGGTGGATGATCATTTTGATGTGTTCTTGGGTTAGGTTATCAA
GAATTTTATTGATTATTTTTGTGCCCATATTCATAAGGGAAATTGGTCTG
AAATTCTCTTTCTTTGTTGGGCCTTTATGTGGTTTAGGTATCAGAGTAAT
TGTGGCTTCATAGACTGAATTGGGTAGAGTACCTTCTGTTTCTATTTTGC
GAATTAGTTTGAGGAGAATTAGAATTAGGTCTTATTTGAAAGTCTGATAG
ACCTCTGCACCAAACCCATCTGGCCTTGGGTTCTTTTGGCTTGGAGACTA
TTAATGACTGCTTCTAGTTCTTTAGGGAATATGGGACAGTTTAGGCTCTT
AATCTGATCCTGATTTTACTTTGGTACTTGGCAACTGTCTAGAAAATTGG
CCTTTTCTTCCATATTTTCCGCTTTGCTGAGTATAACCCTTTTTGTATTA
GGTCTGATGATGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_e04.b1 MSMg01no420_e04.b1 CHROMAT_FILE:
MSMg01no420_e04.b1 PHD_FILE: MSMg01no420_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:03 2005
         (380 letters)



>mm_chr1_18187888_18188667
          Length = 780

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%), Gaps = 2/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacagtttttatgggaaaatattttataggaaaacattattgagctatttatctttata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttacagtttttatgggaaaatattttataggaaaacattattgagctatttatctttata 520

                                                                       
Query: 61  gtaaccaaagctttcaaaaataatcatccaaaagctttattcacatatttattgaagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gtaaccaaagctttcaaaaataatcatccaaaagctttattcacatatttattgaagttc 460

                                                                       
Query: 121 cttttgtctgccttagtatgatgtctcgaaatgacttgagagtgtgggttctatcatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cttttgtctgccttagtatgatgtctcgaaatgacttgagagtgtgggttctatcatcat 400

                                                                       
Query: 181 cat-tgtgtgtcttatatgctttccttatggtatacaaacaatgaaaggcttcccaattt 239
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 c-tctgtgtgtcttatatgctttccttatggtatacaaacaatgaaaggcttcccaattt 341

                                                                       
Query: 240 atcctaataaagatgcatcacactgaaatctaaaatgtttcaattaaaatagaaaaagtg 299
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agcctaataaagatgcatcacactgaaatctaaaatgtttcaattaaaatagaaaaagtg 281

                                                                       
Query: 300 ttcagattttagtattgcaaccaaaatatactttatatatatgaatttactacttaaaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttcagattttagtattgcaaccaaaatatactttatatatatgaatttactacttaaaca 221

                               
Query: 360 ctgattcattaaactcctca 379
           ||||||||||||||||||||
Sbjct: 220 ctgattcattaaactcctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)