BAC Information

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BAC

Clone NameMSMg01-420E10
Chromosome1 (Build37)
Map Location 122,109,066 - 122,109,310
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik
Downstream geneSteap3, C1ql2, Marco, En1, AI848258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420E10.T7 (MSMg01no420_e10.b1)MSMg01-420E10.TJ (MSMg01no420_e10.g1)
ACCAG515180AG515181
length699741
length of high quality
(start - end)
---245 (65 - 309)
definitionCHROMAT_FILE: MSMg01no420_e10.b1 PHD_FILE: MSMg01no420_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:04 2005CHROMAT_FILE: MSMg01no420_e10.g1 PHD_FILE: MSMg01no420_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGTCAACAATTATAGTTGCGCCGATAAACGACTATCTCGAGAAAAGGGC
GGANGGATTTTTTTTCCCAAAAGNCACGAAGAACTAGAGAGAAGCCTCCC
CCCGCGGTGTTTTTGACGTCCTCCAGAAAGGAGAGGAACTAAGAATCAGT
TGGCCCCTGCTGGCGTACTAATTAGGGGCGCCGAATGAAGGCATTAAGCT
GGCCGCCGCCCCCGGGTGGCGTCCTGGCCCTTGGCGGTTATTGGCTTTCT
TTCGGCCACCAAAATAACCTCCTTTTGGAGGCTTGTTTATTGCTGGCCAG
GAGGTTAACAATTTTTTTTTTTTGTGGGGACCTTACGCCTATTAAGGAGG
AGTGCTTTTTGGGAACAACCATCCAGCGTTGGGAAGGTTATTACACCGGT
GATGATGCCCCCCGACTAAAGTTCTAATAGATAAGAGATGAAAAGAGCTG
TTCCAACATCTACCTGCTGGTCCCACTTTTGAATCCTGAGATGCTGGATG
AATGAATCCTACAGATGACCATGGAGAAATGAGGTCCTTTATCCCCTTGG
CTCCCGCTGGTCTCAGCTTTGGCCCCCTGGCCGAGTGGTGGGTCCCCTGG
ATAACCCCTGGCAAGCATTTTCCATAACAACACATACCATCCTATAATTT
TGGCTTCAGGGTAATTCCCTCTCCCCGGAATTAAGCCCCCTTATCCCTN
ATGTTGTAGGCCTGGNGGNCGCCTGGTTTCAAACATGAGGTGAACTATAG
AAGGTACGCAAACATCTCTCCTTCCAATGTCTCTGTCTCTGTCTCCCCAC
CCCCCACCCCCTGCCCCAAGATCTTCCTCTATAGCTCAGTTTGCCCCAAC
TCTTATCTAATGTCAGAGGCAGCTACACTGTGATGTGATGGCTGAATGCT
GTCTGTCTTTGTCTTTTACAAACATCTCTGGCTGAGCACTGTGTTGTTTT
CCTATTTGGGAGAACTGAATTCAAGACCAGTCTGAACAAATTAGTAAGAC
TTTAAGATCATAAATCNGTTAACGCACGGTACTTACATACCTGAAATCCC
ATCATGTGGCAAGCTGGGGTCAGAAGGTTGCCATGAGTTCAAAGCTAGCC
TGGACTAAGGCATGAAACCCCCTAAAAGAAAGGGGGTATCAGTTGTTTGT
TTACTTTGTAAGCATGGAGCCTGGGTTTGACATCTAGATCCAAGCATAAA
ACTGGTCATGGGCTGAAGAGATAACTCAGCAGTTAAGATTTTTTTGTTGC
TGCTTTGTTTTGTTTTTCGAGACCAGGTTTCTCTGGCTGNCCTGGAACTC
ACTCTGTAAACCATGCTTGCCTCGAACTCAGAAATCTGCCCGCCTTCTCC
CTTTTTTATTGTCGTGACCACAGGCTTTCTCCCCCCACTTCTTGTTTTTT
TCTTAAAAAATATCTTTCCTTATCCTACTTTTTCCCCGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_e10.g1 MSMg01no420_e10.g1 CHROMAT_FILE:
MSMg01no420_e10.g1 PHD_FILE: MSMg01no420_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:04 2005
         (245 letters)



>mm_chr1_122108866_122109510
          Length = 645

 Score =  427 bits (221), Expect = e-124
 Identities = 239/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctccttccaatgtctctgtctctgtctccccaccccccaccccctgccccaagatct 60
           |||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||
Sbjct: 201 tctctccttccaatgtctctgtctctttctccccacccccaaccccccgccccaagatct 260

                                                                       
Query: 61  tcctctatagctcagtttgccccaactcttatctaatgtcagaggcagctacactgtgat 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctctatagctcagtttgccccgactcttatctaatgtcagaggcagctacactgtgat 320

                                                                       
Query: 121 gtgatggctgaatgctgtctgtctttgtcttttacaaacatctctggctgagcactgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gtgatggctgaatgctgtctgtctttgtcttttacaaacatctctggctgagcactgtgg 380

                                                                       
Query: 181 tgttttcctatttgggagaactgaattcaagaccagtctgaacaaattagtaagacttta 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tgttttcctatttgggagaactgaattcaaggccagtctgaacaaattagtaagacttta 440

                
Query: 241 agatc 245
           |||||
Sbjct: 441 agatc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)