BAC Information

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BAC

Clone NameMSMg01-420H05
Chromosome1 (Build37)
Map Location 135,795,204 - 135,795,665
singlet/doubletsinglet
Overlap geneOptc
Upstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
Downstream genePrelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420H05.T7 (MSMg01no420_h05.b1)MSMg01-420H05.TJ (MSMg01no420_h05.g1)
ACCAG515313AG515314
length834735
length of high quality
(start - end)		---462 (72 - 533)
definitionCHROMAT_FILE: MSMg01no420_h05.b1 PHD_FILE: MSMg01no420_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:18 2005CHROMAT_FILE: MSMg01no420_h05.g1 PHD_FILE: MSMg01no420_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCTCTTAAAANNNCCNNCNNNNNAANNNNNCCCNTTTCTAACAGGAGG
NGNNGGANNNCNGANCTCCACTAAGATAGACTGAGNNNNNNANAAANNAA
AACAAACTTCAAAANCTGCCCTCCTCCCCCGAGAAATTGAATTTTATCAG
TTGTTGGGCTGTGGGGTTTTTTTACTAGGGTGGGGTCTNTGGAAATTTCC
CACTTTTTNNNNNNTTGNNNNNNNTTAANNNNANGGGGTGTTTGCTTGTT
TTTTTTTTTCTTAGTTTTGTTGGGGGGGGGGTGTTGTGTNNNNNNTNNNN
NNNNNNNNNNNNNNTNNGGTTTTTTTTTTNNNNCNNNAATATTTTTGATT
TAACAAATGTTTATGTTTTTNNNTNTNNNNNNNNNNNTCTCCCCCCCCCT
TCCCCCCTTTTTCCTTCTTTTCNTNNCCTTTTCCTTCTCNCCCCCCTTCC
CCCCCNNNCCCCCCNCCCCCCTTCCCCCCCTTTCNCCNCCCTTTTTTTCC
NNNCCCCNTTCCCCCCCCCCCCCCCTTTTTTTTTTTCCCCCTTTTTTTTC
CATTTTTTNCCTTCTTTTTTTCCCCNNTCCCTTTTTTTCCCTTCCTTTTT
TCCCCTCCCCNNNTCTTCNCCCCCTTTTNTCCCTTNCCNCCCCCCCCCTT
TTTTTCCCCTTTTTTNCTTTTTCTTTCTTTTTTCCCCCCCTNNCCCCNNN
NCCNCCCCCCCNNCCTCCCCCCCTTCCCTCCCCTTCCCCCCCTCTTTTTT
CCCCTTTCCTCTTTTTCTTCCTTTTTTCTTCCCCCCACTCCNTTCTTTNC
CCCNTTTTTTTTTTTATTTGGGGTTTTTTTTATT

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTATCTATTCCAGGCTGGCCTCAGTCTT
GTGGTCCTCCTCCTCCATCTTTCTGAGTCCTACATCACCAAGCCCAGCTG
AGGATGCTGGCTCTTTAAGGGGCTTGCAAATCCTAACTTCATTTGGATGC
TGAAGGGGGAAGGGAAGCTGCTGTCCTTGAGAGCAGGCAGCTGGGTAACA
TACAGGAACCTTTAGAACAGGCTGGGAGGAGCCGGGACCAGGTAAAAACA
AGGACCGTGGGACATTTCAGCTCAGTCTCAATGTCTCTGTCACCGGTGAA
AAGTCTCCCAAATGTCCCACTCAGAGTGGCTGTGGAGAGCATGCTCAAAA
CCTGAGGCACACGCATGTGAGCTTAACAGCACTGTCAGAATCAGGAAAGG
CTAATCTGAGAGGAACATAGGGAAGAGAGCAGCCTGCGGGGGCTCAGAGA
ACATCGAGGAACAAGACACCTCTTCCCAGAGCACCCACTACCTGCATTTA
GCCATCCTGTGATCTGTGCAAACGCTGGGTCTGTTCAGTCCCGCAGCGGT
TGTGTCGAGCGCGCCCTCATACCCTTGTTTTGTGTACTAGGCATCAAGAA
CCCTAGGGGCCCCCCTCTTTGATCCCCTGCCCATTGCCTGCCATATCCTT
GCCCTTTTCTGGGTCCAAAAATATTTTCTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_h05.g1 MSMg01no420_h05.g1 CHROMAT_FILE:
MSMg01no420_h05.g1 PHD_FILE: MSMg01no420_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:18 2005
         (462 letters)



>mm_chr1_135795004_135795865
          Length = 862

 Score =  847 bits (438), Expect = 0.0
 Identities = 456/462 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatctattccaggctggcctcagtcttgtggtcctcctcctccatctttctgagtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatctattccaggctggcctcagtcttgtggtcctcctcctccatctttctgagtcct 260

                                                                       
Query: 61  acatcaccaagcccagctgaggatgctggctctttaaggggcttgcaaatcctaacttca 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 acatcaccaagcccagctgaggatgctgcctctttaaggggcttgcaaatcctaacttca 320

                                                                       
Query: 121 tttggatgctgaagggggaagggaagctgctgtccttgagagcaggcagctgggtaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggatgctgaagggggaagggaagctgctgtccttgagagcaggcagctgggtaacat 380

                                                                       
Query: 181 acaggaacctttagaacaggctgggaggagccgggaccaggtaaaaacaaggaccgtggg 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 acaggaacctttagaacaggctgggaggagctgggaccaggtaaaaacaaggaccgtggg 440

                                                                       
Query: 241 acatttcagctcagtctcaatgtctctgtcaccggtgaaaagtctcccaaatgtcccact 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatttcagctcagtctcaacgtctctgtcaccggtgaaaagtctcccaaatgtcccact 500

                                                                       
Query: 301 cagagtggctgtggagagcatgctcaaaacctgaggcacacgcatgtgagcttaacagca 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagtggctgtgaagagcatgctcaaaacctgaggcacacgcatgtgagcttaacagca 560

                                                                       
Query: 361 ctgtcagaatcaggaaaggctaatctgagaggaacatagggaagagagcagcctgcgggg 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtcagaatcaggaaaggctgatctgagaggaacatagggaagagagcagcctgcgggg 620

                                                     
Query: 421 gctcagagaacatcgaggaacaagacacctcttcccagagca 462
           ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 gctcagagaacattgaggaacaagacacctcttcccagagca 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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